Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1408
         (751 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical...    32   0.50 
CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical ...    31   0.87 
Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical pr...    28   6.2  
AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical ...    28   6.2  

>AL031627-13|CAA20964.1|  304|Caenorhabditis elegans Hypothetical
           protein Y102A5C.23 protein.
          Length = 304

 Score = 31.9 bits (69), Expect = 0.50
 Identities = 21/101 (20%), Positives = 48/101 (47%)
 Frame = -1

Query: 472 IITKKITCVQFTRGRSETFQN*NTIILNVLSICKILSLVNNCKVAPSVN*YFNFTYNPEL 293
           IITK+++C+ +     E  Q    I  ++      LS +    +  S+  Y N  +    
Sbjct: 141 IITKEVSCLLYASWDYEPVQFQYWITCSINDALVFLSAILYIPIVISIRKYANLRWAQRS 200

Query: 292 KFTTRAFIHTLVLKISQMALY*IVCIFLSHSLLASSYTFLY 170
           +     F+ T+V+ ++  ++  +VC+  +H+ ++ +  F+Y
Sbjct: 201 QPHKYIFLQTMVV-LTFKSIQVLVCLMTNHNGISLTSLFIY 240


>CU457741-7|CAM36348.1|  710|Caenorhabditis elegans Hypothetical
           protein C42C1.7 protein.
          Length = 710

 Score = 31.1 bits (67), Expect = 0.87
 Identities = 17/53 (32%), Positives = 25/53 (47%)
 Frame = -1

Query: 307 YNPELKFTTRAFIHTLVLKISQMALY*IVCIFLSHSLLASSYTFLYLCLLPVV 149
           Y  +L      F HT  L +     + +  IFL  +L +S + F Y CLL V+
Sbjct: 128 YFEKLSLAMDIFTHTWSLSVEIQFYFVVPFIFLIGNLFSSVFKFGYYCLLGVI 180


>Z68315-4|CAA92675.2|  745|Caenorhabditis elegans Hypothetical
           protein F28C6.4a protein.
          Length = 745

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 2/48 (4%)
 Frame = +2

Query: 404 ILILEGFTSTSCELHTCNFFSYNASS--KSLFCRLIL*RHNFVHRLHS 541
           IL L G  ++SC     + FSY  SS   SL C  I   H F+  ++S
Sbjct: 679 ILFLCGCNASSCTSLLNHLFSYRISSMCTSLICLYIFQNHLFIWSVYS 726


>AL031632-1|CAA21004.1|  248|Caenorhabditis elegans Hypothetical
           protein Y32B12B.1 protein.
          Length = 248

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 8/13 (61%), Positives = 10/13 (76%)
 Frame = -1

Query: 583 VYPYRICNCLCVY 545
           +Y Y+ C CLCVY
Sbjct: 9   IYSYKFCRCLCVY 21


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,937,486
Number of Sequences: 27780
Number of extensions: 361047
Number of successful extensions: 938
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 919
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 938
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1777507862
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)