Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1408
         (751 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               23   3.1  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   4.0  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   4.0  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   4.0  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   4.0  
AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    23   4.0  
AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139 prot...    22   7.1  

>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = -3

Query: 677 ITHCMFHRSDNVKNIILRFSTFYLYLN 597
           I  C+FHR   + + +   S F +YLN
Sbjct: 56  IEACLFHRLALMNDNVFDVSKFDVYLN 82


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 211 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 119
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 211 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 119
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 211 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 119
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = -1

Query: 211 LSHSLLASSYTFLYLCLLPVVFSVASGLKSQ 119
           LS + LASS  F  LC+L +  ++ + ++++
Sbjct: 22  LSLTSLASSLIFTILCILTLALTLVTLVRAE 52


>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 22.6 bits (46), Expect = 4.0
 Identities = 7/13 (53%), Positives = 11/13 (84%)
 Frame = +2

Query: 641 LHYLNGETYSE*C 679
           +HY NG+T+S+ C
Sbjct: 370 VHYSNGQTHSQLC 382


>AF274024-1|AAF90150.1|  232|Apis mellifera tetraspanin F139
           protein.
          Length = 232

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = -2

Query: 624 IFYILFIFKCVF*LC 580
           I Y+LFIF  VF +C
Sbjct: 8   IKYLLFIFNFVFAVC 22


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 207,110
Number of Sequences: 438
Number of extensions: 4736
Number of successful extensions: 13
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23510295
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)