Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1407
         (791 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q553C2 Cluster: Putative uncharacterized protein; n=2; ...    34   3.6  
UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD...    34   4.7  
UniRef50_Q8IBH6 Cluster: Putative uncharacterized protein PF07_0...    33   6.2  
UniRef50_A0BIM4 Cluster: Chromosome undetermined scaffold_11, wh...    33   8.2  

>UniRef50_Q553C2 Cluster: Putative uncharacterized protein; n=2;
           Dictyostelium discoideum|Rep: Putative uncharacterized
           protein - Dictyostelium discoideum AX4
          Length = 334

 Score = 34.3 bits (75), Expect = 3.6
 Identities = 19/51 (37%), Positives = 29/51 (56%)
 Frame = +3

Query: 537 LTP*HLELLLTYLSNKKIKVNHATDVLGVYIDHNYLAVLTYIGLSYLPLQA 689
           L+P H +L+    + K +K+   +D+L  Y D NY  V+T  G+ Y  LQA
Sbjct: 123 LSPQHKQLIRLPKNFKDVKL--LSDILSQYTDDNYFIVITTFGVIYTFLQA 171


>UniRef50_Q25802 Cluster: RpoD protein; n=2; Plasmodium|Rep: RpoD
           protein - Plasmodium falciparum
          Length = 960

 Score = 33.9 bits (74), Expect = 4.7
 Identities = 25/80 (31%), Positives = 40/80 (50%), Gaps = 2/80 (2%)
 Frame = -1

Query: 551 VLRG*ANMQQLNNSCFYSNKYCFRFYI--IFSYLDIIPLTL*KDHFHLNDKFN*NYLKLK 378
           +L+   N+Q LN   + +N + +  Y   +F YL+II   + K + +   K+  N L   
Sbjct: 529 ILKNFNNIQILNKLFYVNNIFIYYKYEKKLFIYLNIINNIIIKKYLNFY-KYTYNKLFFI 587

Query: 377 TNYTN*ILSFEIFKKNIY*Y 318
             Y N +  +EIFK N Y Y
Sbjct: 588 KKYNNFLYLYEIFKYNWYKY 607


>UniRef50_Q8IBH6 Cluster: Putative uncharacterized protein PF07_0118;
            n=3; Plasmodium|Rep: Putative uncharacterized protein
            PF07_0118 - Plasmodium falciparum (isolate 3D7)
          Length = 5561

 Score = 33.5 bits (73), Expect = 6.2
 Identities = 24/77 (31%), Positives = 39/77 (50%), Gaps = 3/77 (3%)
 Frame = -1

Query: 533  NMQQLNNSCFYSNKYCFRFYIIFSYLDII---PLTL*KDHFHLNDKFN*NYLKLKTNYTN 363
            N    NN+  Y+N Y +   +  SYL +     ++L K +  L D FN  ++    N+ N
Sbjct: 1651 NNNNNNNNNIYNNNYYYDNNLFLSYLHLYEKNSISLYKKNLKLFDNFNLTHI----NFIN 1706

Query: 362  *ILSFEIFKKNIY*YNI 312
             + +F IF +NIY  N+
Sbjct: 1707 VLFNF-IFYENIYLINL 1722


>UniRef50_A0BIM4 Cluster: Chromosome undetermined scaffold_11, whole
           genome shotgun sequence; n=2; Paramecium
           tetraurelia|Rep: Chromosome undetermined scaffold_11,
           whole genome shotgun sequence - Paramecium tetraurelia
          Length = 169

 Score = 33.1 bits (72), Expect = 8.2
 Identities = 14/34 (41%), Positives = 22/34 (64%)
 Frame = +3

Query: 12  ETNNHSSKEAAK*LLRNCPNAVHNIHTGKSKCFQ 113
           +TNN  SK+  + L+R C N + +I TG+ K F+
Sbjct: 65  DTNNFFSKQRKRRLMRKCQNIIIDIATGEIKLFE 98


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 635,762,380
Number of Sequences: 1657284
Number of extensions: 11413942
Number of successful extensions: 20866
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 20155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20863
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 67496806780
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)