Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1407
         (791 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical pro...    22   4.9  
AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription fa...    22   6.5  
AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.           22   6.5  
AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450 ...    21   8.5  
AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450 ...    21   8.5  

>AM712901-1|CAN84640.1|  205|Tribolium castaneum hypothetical
           protein protein.
          Length = 205

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = +2

Query: 710 KFCKVLKRIIVLVRVGTFV 766
           KFC++LK  I+ + V T +
Sbjct: 36  KFCRILKYFIIAIYVLTIL 54


>AJ415419-1|CAC94468.1|  441|Tribolium castaneum transcription
           factor protein.
          Length = 441

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -3

Query: 69  WDSFSTITWRLPWTNDCWSLQS 4
           W +  T T  +  T +CWSL S
Sbjct: 307 WSTVQTPTTVMSPTINCWSLTS 328


>AF321227-4|AAK16424.1|  246|Tribolium castaneum Zen protein.
          Length = 246

 Score = 21.8 bits (44), Expect = 6.5
 Identities = 11/23 (47%), Positives = 12/23 (52%), Gaps = 5/23 (21%)
 Frame = -3

Query: 54  TITWRLPWTNDC-----WSLQSF 1
           TI W LP   DC     W+ QSF
Sbjct: 214 TIDWALPKQEDCFYQEGWNGQSF 236


>AY337337-1|AAP94192.1|  505|Tribolium castaneum cytochrome P450
           monooxygenase protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 377 FSILDNFS*IYH*DGNDLSKVLKE 448
           FSIL  F  I++ + + L +VLKE
Sbjct: 143 FSILQQFVAIFNEETDKLVEVLKE 166


>AF254755-1|AAF70496.1|  505|Tribolium castaneum cytochrome P450
           monooxigenase CYP4Q7 protein.
          Length = 505

 Score = 21.4 bits (43), Expect = 8.5
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = +2

Query: 377 FSILDNFS*IYH*DGNDLSKVLKE 448
           FSIL  F  I++ + + L +VLKE
Sbjct: 143 FSILQQFVAIFNEETDKLVEVLKE 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 162,720
Number of Sequences: 336
Number of extensions: 3228
Number of successful extensions: 7
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21480183
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)