Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1407
         (791 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit Sf...    27   3.1  
SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase P...    26   5.4  
SPAC6G9.04 |mug79||meiotically upregulated gene Mug79|Schizosacc...    25   9.4  
SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor |S...    25   9.4  

>SPBC336.07 |sfc3||transcription factor TFIIIC complex subunit
            Sfc3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1339

 Score = 27.1 bits (57), Expect = 3.1
 Identities = 17/52 (32%), Positives = 25/52 (48%)
 Frame = +3

Query: 501  IETTVVELLHIGLTP*HLELLLTYLSNKKIKVNHATDVLGVYIDHNYLAVLT 656
            + + +  LL  GL P     +L Y     I    A +  G+Y++HNYL  LT
Sbjct: 1292 LRSQLTNLLFPGLEPREFNEVLDYF----IAAGAAIEKDGLYLNHNYLFKLT 1339


>SPBC1778.10c |ppk21|SPBC4C3.11|serine/threonine protein kinase
           Ppk21|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 550

 Score = 26.2 bits (55), Expect = 5.4
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -3

Query: 60  FSTITWRLPWTNDCWSLQSF 1
           F+TITW   WT D   +QSF
Sbjct: 314 FATITWDNLWTQDPPPMQSF 333


>SPAC6G9.04 |mug79||meiotically upregulated gene
           Mug79|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = -3

Query: 345 NFQKKYILIQYSLSSYK*MHQDNLQVNAVCCMTISINYGYI 223
           +FQK    + Y    Y  +H   LQV A C +  + NYG++
Sbjct: 789 SFQKLCCDLYYGSDDY--IHSPILQVFASCWLKQNSNYGFL 827


>SPAC1851.04c ||SPAC27D7.01c|guanyl-nucleotide exchange factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1052

 Score = 25.4 bits (53), Expect = 9.4
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +3

Query: 579 NKKIKVNHATDVLGVYIDHNYLAV 650
           NKKI VN    ++ V  + NY+AV
Sbjct: 64  NKKIAVNSEYGIIAVATEKNYVAV 87


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,828,196
Number of Sequences: 5004
Number of extensions: 54057
Number of successful extensions: 114
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 385381248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)