Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1407
         (791 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF067942-11|AAG45576.2|  406|Caenorhabditis elegans Downstream o...    31   0.71 
AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine re...    28   8.8  

>AF067942-11|AAG45576.2|  406|Caenorhabditis elegans Downstream of
           daf-16 (regulatedby daf-16) protein 19 protein.
          Length = 406

 Score = 31.5 bits (68), Expect = 0.71
 Identities = 13/27 (48%), Positives = 18/27 (66%)
 Frame = -3

Query: 672 TTILYMSTPLSSYDQYILLIHQWHDSP 592
           TTIL+++T +SS   Y   I QWH +P
Sbjct: 145 TTILFLNTYMSSNPVYSSTISQWHQNP 171


>AF125442-5|AAD12795.1|  314|Caenorhabditis elegans Serpentine
           receptor, class v protein22 protein.
          Length = 314

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 21/85 (24%), Positives = 39/85 (45%), Gaps = 1/85 (1%)
 Frame = +3

Query: 474 IEPKTIFI*IETTVVELLHIGLTP*HLELLLTYLSNKKIKVNHATDVLGVYIDHNYLAVL 653
           ++ K+I       V   L + +TP ++ +L+  L  ++  V   T    + I H   ++ 
Sbjct: 15  VDTKSISYQWPLLVFYFLFVTVTPVYILILICILRARRSSVTFKTTFYVILIQH---SIA 71

Query: 654 TYIGLSYLPLQAHNKYANPNFV-KY 725
               LS+   QA ++   PNF+ KY
Sbjct: 72  DIFALSFYFFQASSQIIMPNFLFKY 96


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,239,946
Number of Sequences: 27780
Number of extensions: 287063
Number of successful extensions: 514
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 500
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 514
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1924757034
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)