Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1407
         (791 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex det...    24   1.9  
DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex det...    22   7.5  
DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.              21   9.9  
AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    21   9.9  

>AY569721-1|AAS86674.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 23.8 bits (49), Expect = 1.9
 Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 5/35 (14%)
 Frame = -1

Query: 530 MQQLNNSCFYSNKY-----CFRFYIIFSYLDIIPL 441
           +  L+NSC YSN Y       + Y   +Y++ IP+
Sbjct: 304 ISSLSNSCNYSNNYYNNNNYKKLYYNINYIEQIPI 338



 Score = 22.2 bits (45), Expect = 5.7
 Identities = 6/12 (50%), Positives = 9/12 (75%)
 Frame = -2

Query: 766 HECTYTNQYYNS 731
           + C Y+N YYN+
Sbjct: 309 NSCNYSNNYYNN 320


>DQ325113-1|ABD14127.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 536 ANMQQLNNSCFYSNKYCFRFYIIFSYLDIIPL 441
           +N    NN+ + +N Y    Y   +Y++ IP+
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325112-1|ABD14126.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 536 ANMQQLNNSCFYSNKYCFRFYIIFSYLDIIPL 441
           +N    NN+ + +N Y    Y   +Y++ IP+
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325111-1|ABD14125.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 536 ANMQQLNNSCFYSNKYCFRFYIIFSYLDIIPL 441
           +N    NN+ + +N Y    Y   +Y++ IP+
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ325110-1|ABD14124.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.8 bits (44), Expect = 7.5
 Identities = 9/32 (28%), Positives = 17/32 (53%)
 Frame = -1

Query: 536 ANMQQLNNSCFYSNKYCFRFYIIFSYLDIIPL 441
           +N    NN+ + +N Y    Y   +Y++ IP+
Sbjct: 92  SNYNNYNNNNYNNNNYKKLQYYNINYIEQIPI 123


>DQ435333-1|ABD92648.1|  135|Apis mellifera OBP16 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
 Frame = +3

Query: 51  LLRNC-PNAVHNIHTGKSKCFQCY 119
           L+  C P +  N+H   SK FQC+
Sbjct: 100 LIVECSPISDANVHIKISKIFQCF 123


>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 21.4 bits (43), Expect = 9.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 422 FHLNDKFN*NYLKLKTNYTN*ILSFEIFKKN 330
           F   + +N NY   K+N +N   S  +FK+N
Sbjct: 132 FPQENNYNDNYFYSKSNGSNSSNSDVLFKQN 162


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 192,749
Number of Sequences: 438
Number of extensions: 3842
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 25003662
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)