Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1406
         (786 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less prot...    24   1.2  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    23   2.8  
DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulati...    22   6.4  
AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory recept...    21   8.4  
AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory recept...    21   8.4  
AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory recept...    21   8.4  
AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory recept...    21   8.4  

>AF317551-1|AAG39634.1|  312|Tribolium castaneum distal-less
           protein.
          Length = 312

 Score = 24.2 bits (50), Expect = 1.2
 Identities = 12/38 (31%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
 Frame = +3

Query: 354 RVSRRFRIVLHLAFPER--FSSQLGHSKNRLGLHIQQR 461
           +++RRF+   +LA PER   ++ LG ++ ++ +  Q R
Sbjct: 135 QLNRRFQRTQYLALPERAELAASLGLTQTQVKIWFQNR 172


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
           adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +3

Query: 486 HPADHNRALFNFASIQE 536
           HP DHN A+    S+++
Sbjct: 366 HPIDHNEAVLRIESVRK 382


>DQ490059-1|ABF22614.1|  947|Tribolium castaneum short gastrulation
           protein.
          Length = 947

 Score = 21.8 bits (44), Expect = 6.4
 Identities = 6/15 (40%), Positives = 11/15 (73%)
 Frame = +3

Query: 687 PYINGKKYKDAIIRI 731
           PY+NG +Y  +I+ +
Sbjct: 854 PYVNGSEYHPSIVSL 868


>AM292383-1|CAL23195.2|  320|Tribolium castaneum gustatory receptor
           candidate 62 protein.
          Length = 320

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/47 (19%), Positives = 21/47 (44%)
 Frame = -2

Query: 728 PYNRVFIFFAIYVWNYVSKTITGVNYNCAVIFMSPTIIVFSQICSIY 588
           P+  +  F ++ +  Y+         + A I  + T+I +  +C+ Y
Sbjct: 202 PFLLLITFTSLQIMVYLQHIFVKSRPSPATIISNVTVISWQAVCTFY 248


>AM292358-1|CAL23170.2|  331|Tribolium castaneum gustatory receptor
           candidate 37 protein.
          Length = 331

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/47 (19%), Positives = 21/47 (44%)
 Frame = -2

Query: 728 PYNRVFIFFAIYVWNYVSKTITGVNYNCAVIFMSPTIIVFSQICSIY 588
           P+  +  F ++ +  Y+         + A I  + T+I +  +C+ Y
Sbjct: 202 PFLLLITFTSLQIMVYLQHIFVKSRPSPATIISNVTVISWQAVCTFY 248


>AM292353-1|CAL23165.2|  651|Tribolium castaneum gustatory receptor
           candidate 32 protein.
          Length = 651

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/47 (19%), Positives = 21/47 (44%)
 Frame = -2

Query: 728 PYNRVFIFFAIYVWNYVSKTITGVNYNCAVIFMSPTIIVFSQICSIY 588
           P+  +  F ++ +  Y+         + A I  + T+I +  +C+ Y
Sbjct: 522 PFLLLITFTSLQIMVYLQHIFVKSRPSPATIISNVTVISWQAVCTFY 568


>AM292340-1|CAL23152.1|  355|Tribolium castaneum gustatory receptor
           candidate 19 protein.
          Length = 355

 Score = 21.4 bits (43), Expect = 8.4
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -1

Query: 711 YIFCHLCMELCK*NYNRSQLQLCSHFY 631
           Y +C L + LC   + R+ +   +HFY
Sbjct: 287 YFYCALIILLCIYYFCRAFIIFPTHFY 313


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,508
Number of Sequences: 336
Number of extensions: 4048
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 21272645
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)