Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1406
(786 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 62 9e-11
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 45 1e-05
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 44 2e-05
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 40 5e-04
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 33 0.061
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 32 0.081
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces... 31 0.25
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 30 0.43
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 29 1.00
SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1 |Schizos... 27 4.0
SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces pom... 27 4.0
SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyc... 26 5.3
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 62.1 bits (144), Expect = 9e-11
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 1/91 (1%)
Frame = +1
Query: 256 KVGFSNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQKT 435
K GF+ K IPNC+ ++K + R F+G++L C D + L + +KG+LV+W T+
Sbjct: 18 KAGFAGGKVVEIPNCLTRSK-DGNRLFLGNELANCNDFTTLQFRRAHEKGYLVHWSTETA 76
Query: 436 VWDFIF-SKECCPVNFNDTPLIITERFLTLP 525
VWD + + + D L++T+ T+P
Sbjct: 77 VWDLVMRNVGVMEPSMADYSLLLTQPVFTMP 107
Score = 61.3 bits (142), Expect = 2e-10
Identities = 32/96 (33%), Positives = 54/96 (56%), Gaps = 10/96 (10%)
Frame = +3
Query: 510 LFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKN----------DCTVVVD 659
+F SI+ ++ FEE++ + L +L +++ N +C +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 660 SGYSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH*K 767
SGYSFT+I+P I+ + A+ R+DVGGK+LTN+ K
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLK 198
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 44.8 bits (101), Expect = 1e-05
Identities = 30/92 (32%), Positives = 44/92 (47%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N S +E MT+I FE + + L+ Y RT +V+DSG
Sbjct: 101 HPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRT----TGIVLDSG 156
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
T+ VP G AI+R+D+ G+ LT++
Sbjct: 157 DGVTHTVPIYEGYALPHAIMRLDLAGRDLTDY 188
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
DE + G+ + P + G + NWD + +W F E V + P ++TE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNE-LRVAPEEHPCLLTE 107
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 44.0 bits (99), Expect = 2e-05
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 10/115 (8%)
Frame = +1
Query: 256 KVGFSNSK--SRIIPNCIMKAKSERRRP-------FIGSQLDECRDASGLFYIL-PFQKG 405
K GF+ + P C+ + K ER P F+GS+ R GL I P ++G
Sbjct: 22 KAGFAGDDIPKCLFPTCVGRIKHERVMPSSIQKDMFVGSEAQNLR---GLLKIQRPIERG 78
Query: 406 FLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITERFLTLPQYKRR*RKYSSKNTN 570
+ NW + +W +I+S + + PL++TE L + K + +Y + N
Sbjct: 79 IIQNWSDMEEIWSYIYSDQQLNTLPEEHPLLLTEPPLANIRNKEKIAEYFYETLN 133
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 39.5 bits (88), Expect = 5e-04
Identities = 23/86 (26%), Positives = 40/86 (46%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP L N ++ MTE+ FE Y S+ L + Y T + +V++ G
Sbjct: 116 HPICMTEPLANPTYVRSTMTELLFELYNAPSVA-YGIDGLFSF-YHNTKPSSSGIVLNLG 173
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGG 743
+ ++++P +NG++ RI GG
Sbjct: 174 NAASHVIPVLNGERILSEAKRISWGG 199
Score = 29.5 bits (63), Expect = 0.57
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +1
Query: 391 PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITERFLTLPQYKR 537
PF++ + NWD + V D+ F K ++ + P+ +TE L P Y R
Sbjct: 86 PFERNVISNWDLMEQVLDYTFLK--LGIDRMEHPICMTEP-LANPTYVR 131
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 32.7 bits (71), Expect = 0.061
Identities = 21/77 (27%), Positives = 35/77 (45%)
Frame = +3
Query: 531 QEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSGYSFTYIVPYINGKKY 710
+E T+ FFEE + + Y H +V+D GY T I P ++G+
Sbjct: 162 RELATQFFFEECQVPGFTIAYEPLMGLYAIGILHG----LVIDIGYEKTDITPILDGQII 217
Query: 711 KDAIIRIDVGGKVLTNH 761
A ++ +GG+ +T H
Sbjct: 218 FTATQQLPLGGRYMTQH 234
Score = 27.5 bits (58), Expect = 2.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +1
Query: 385 ILPFQKGFLVNWDTQKTVWDFIFS 456
I P Q+G +V+W+ K W ++S
Sbjct: 111 IQPIQRGRVVDWEALKAFWKHLYS 134
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 32.3 bits (70), Expect = 0.081
Identities = 29/108 (26%), Positives = 47/108 (43%), Gaps = 8/108 (7%)
Frame = +3
Query: 456 QRMLPSQLQ*HPADHNRAL----FNFASIQEAMTEIFFEEYECQSL-LRINATDLAEYNY 620
Q+ L L+ P DH L N +E EI FE + C L + + A ++
Sbjct: 110 QQSLFKYLRCEPEDHYFLLTEPPLNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASW 169
Query: 621 RRTHKNDCTV---VVDSGYSFTYIVPYINGKKYKDAIIRIDVGGKVLT 755
+ D ++ VVDSG T+I+P G +I + + G+ +T
Sbjct: 170 TSSKVTDRSLTGTVVDSGDGVTHIIPVAEGYVIGSSIKTMPLAGRDVT 217
>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 513
Score = 30.7 bits (66), Expect = 0.25
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = -1
Query: 702 CHLCMELCK*NYNRSQLQLCSHFYESYDNCIQP 604
C +CME+ K N + QL C H++ ++NCI+P
Sbjct: 396 CTICMEMFKINDDVIQLP-CKHYF--HENCIKP 425
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 29.9 bits (64), Expect = 0.43
Identities = 15/38 (39%), Positives = 20/38 (52%)
Frame = +3
Query: 648 VVVDSGYSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
VVVDSG T+IVP + R+DV G+ T +
Sbjct: 151 VVVDSGDGVTHIVPVYESVVLNHLVGRLDVAGRDATRY 188
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 28.7 bits (61), Expect = 1.00
Identities = 18/57 (31%), Positives = 26/57 (45%)
Frame = +1
Query: 190 LNKRYENERDLLLYIGQRSLYGKVGFSNSKSRIIPNCIMKAKSERRRPFIGSQLDEC 360
+N+ YE + + +Y G FSN KS++IPNC S PF + C
Sbjct: 621 INQAYETQ-EAQVYKGMLKC-SVCNFSNWKSKLIPNCGHAFCSNCMEPFYEHKTSTC 675
>SPAC23A1.19c ||SPAC26H5.01c|RecQ type DNA helicase Hrq1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1063
Score = 26.6 bits (56), Expect = 4.0
Identities = 13/23 (56%), Positives = 15/23 (65%)
Frame = +1
Query: 307 KAKSERRRPFIGSQLDECRDASG 375
+AKSERRRP D C D+SG
Sbjct: 948 EAKSERRRPSRLIFYDNCGDSSG 970
>SPAC22H10.03c |kap114||karyopherin Kap14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 986
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = -2
Query: 770 SLSMIRKHFPANINPYNRVFIFFAIYVWNYVSKTI 666
+L+ +R+ FP+ + PY + F VWN + K +
Sbjct: 265 TLTKLRELFPSKLTPY---VVTFVELVWNIIEKLL 296
>SPAC17A2.04c |||HSP chaperone complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 358
Score = 26.2 bits (55), Expect = 5.3
Identities = 10/38 (26%), Positives = 22/38 (57%)
Frame = +3
Query: 444 LHIQQRMLPSQLQ*HPADHNRALFNFASIQEAMTEIFF 557
L +Q+R + ++ HP D A+ + ++ + +E+FF
Sbjct: 209 LALQERHIKTKTTEHPPDLGDAMISLSTFDDPKSELFF 246
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,225,012
Number of Sequences: 5004
Number of extensions: 67306
Number of successful extensions: 174
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 381366860
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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