Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1406
(786 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011) 107 1e-23
SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.) 45 6e-05
SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.) 44 1e-04
SB_56| Best HMM Match : Actin (HMM E-Value=0) 44 1e-04
SB_56628| Best HMM Match : Actin (HMM E-Value=0) 44 1e-04
SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07) 40 0.002
SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.) 38 0.009
SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.016
SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40) 35 0.065
SB_3885| Best HMM Match : Actin (HMM E-Value=0.77) 32 0.61
SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.) 32 0.61
SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 31 0.80
SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013) 31 0.80
SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.8
SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0) 29 4.3
SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0) 28 7.5
SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 7.5
SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.9
>SB_3433| Best HMM Match : Actin (HMM E-Value=0.00011)
Length = 580
Score = 107 bits (256), Expect = 1e-23
Identities = 46/70 (65%), Positives = 55/70 (78%), Gaps = 1/70 (1%)
Frame = +1
Query: 256 KVGF-SNSKSRIIPNCIMKAKSERRRPFIGSQLDECRDASGLFYILPFQKGFLVNWDTQK 432
K+GF SN R IPN I KAKSERR+ FIG Q++EC+D S LFY+LPFQKGFLVNWD +K
Sbjct: 246 KIGFASNQAPRSIPNAIFKAKSERRKLFIGDQIEECKDYSALFYVLPFQKGFLVNWDVEK 305
Query: 433 TVWDFIFSKE 462
+WD+ F KE
Sbjct: 306 QIWDYTFGKE 315
Score = 64.1 bits (149), Expect = 1e-10
Identities = 33/74 (44%), Positives = 44/74 (59%), Gaps = 2/74 (2%)
Frame = +3
Query: 513 FNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRR--THKNDCTVVVDSGYSFTYIV 686
F +++AM EI FEEY ++L R A L+ Y + KN +VVD+GYSFT+IV
Sbjct: 312 FGKEGLEDAMDEILFEEYNFKALSRTTAAQLSAYKCHQDMVSKNPVCLVVDTGYSFTHIV 371
Query: 687 PYINGKKYKDAIIR 728
P NGK K A+ R
Sbjct: 372 PVFNGKVIKKAVRR 385
>SB_23733| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 376
Score = 45.2 bits (102), Expect = 6e-05
Identities = 30/92 (32%), Positives = 45/92 (48%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N + +E MT+I FE + ++ L+ Y RT +V+DSG
Sbjct: 102 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT----TGIVMDSG 157
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
T+ VP G AIIR+D+ G+ LT++
Sbjct: 158 DGVTHTVPIYEGYALPHAIIRLDLAGRDLTDY 189
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
DE + G+ + P + G + NWD + +W F E V + P+++TE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108
>SB_7190| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 375
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/92 (31%), Positives = 45/92 (48%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N + +E MT+I FE + ++ L+ Y RT +V+DSG
Sbjct: 101 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT----TGIVMDSG 156
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
T+ VP G AI+R+D+ G+ LT++
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDY 188
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
DE + G+ + P + G + NWD + +W F E V + P+++TE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 107
>SB_56| Best HMM Match : Actin (HMM E-Value=0)
Length = 375
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/92 (31%), Positives = 45/92 (48%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N + +E MT+I FE + ++ L+ Y RT +V+DSG
Sbjct: 101 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT----TGIVMDSG 156
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
T+ VP G AI+R+D+ G+ LT++
Sbjct: 157 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDY 188
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
DE + G+ + P + G + NWD + +W F E V + P+++TE
Sbjct: 56 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 107
>SB_56628| Best HMM Match : Actin (HMM E-Value=0)
Length = 376
Score = 44.4 bits (100), Expect = 1e-04
Identities = 29/92 (31%), Positives = 45/92 (48%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N + +E MT+I FE + ++ L+ Y RT +V+DSG
Sbjct: 102 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT----TGIVMDSG 157
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
T+ VP G AI+R+D+ G+ LT++
Sbjct: 158 DGVTHTVPIYEGYALPHAILRLDLAGRDLTDY 189
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
DE + G+ + P + G + NWD + +W F E V + P+++TE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108
>SB_6996| Best HMM Match : Actin (HMM E-Value=1.7e-07)
Length = 240
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/103 (26%), Positives = 49/103 (47%)
Frame = +3
Query: 447 HIQQRMLPSQLQ*HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRR 626
+I + + S HP + A +N +E +TE+ FE+Y + + L + R
Sbjct: 21 YIYSKNIKSDSALHPLLMSEAAWNTRIKREKLTELMFEKYNVPAFFLCKNSVLTAFANGR 80
Query: 627 THKNDCTVVVDSGYSFTYIVPYINGKKYKDAIIRIDVGGKVLT 755
++ +V+DSG + T VP +G + AI+R + G +T
Sbjct: 81 SNG----LVIDSGATQTSAVPVHDGYVLQQAIVRSPLAGDFIT 119
>SB_19204| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 411
Score = 37.9 bits (84), Expect = 0.009
Identities = 18/52 (34%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
Frame = +1
Query: 364 DASGLFYIL----PFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
+AS L Y+L P G + NWD K VWD+ F + ++ +T +++TE
Sbjct: 60 EASQLRYMLEVNYPMDNGIVRNWDDMKHVWDYTFGESKMNIDPRNTKVLLTE 111
Score = 31.5 bits (68), Expect = 0.80
Identities = 21/77 (27%), Positives = 33/77 (42%)
Frame = +3
Query: 531 QEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSGYSFTYIVPYINGKKY 710
+E M E+ FE Y+ + + L Y VV+DSG T+I P G
Sbjct: 120 REKMIEVMFENYQFEGVYIAIQAVLTLYAQGLL----TGVVIDSGDGVTHICPVYEGFAL 175
Query: 711 KDAIIRIDVGGKVLTNH 761
R+D+ G+ +T +
Sbjct: 176 PHLTRRLDIAGRDITKY 192
>SB_23734| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 338
Score = 37.1 bits (82), Expect = 0.016
Identities = 24/74 (32%), Positives = 37/74 (50%)
Frame = +3
Query: 540 MTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSGYSFTYIVPYINGKKYKDA 719
M +I FE + ++ L+ Y RT +V+DSG T+ VP G A
Sbjct: 82 MEKIMFETFNSPAMYVAIQAVLSLYASGRT----TGIVMDSGDGVTHTVPIYEGYALPHA 137
Query: 720 IIRIDVGGKVLTNH 761
IIR+D+ G+ LT++
Sbjct: 138 IIRLDLAGRDLTDY 151
>SB_27656| Best HMM Match : Actin (HMM E-Value=4.79999e-40)
Length = 367
Score = 35.1 bits (77), Expect = 0.065
Identities = 25/92 (27%), Positives = 41/92 (44%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N +E E+FFE + +L L+ Y RT VV+D+G
Sbjct: 127 HPVLLTEAPLNPRRNREKAAEVFFETFNVPALFISMQAVLSLYATGRT----TGVVLDAG 182
Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
++ VP G +I+R D+ G+ ++ +
Sbjct: 183 DGVSHSVPIYEGFAMPHSIMRTDIAGRDVSRY 214
>SB_3885| Best HMM Match : Actin (HMM E-Value=0.77)
Length = 152
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/38 (39%), Positives = 23/38 (60%)
Frame = +3
Query: 648 VVVDSGYSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
VV DSG ++ VP G AI+R+D+ G+ LT++
Sbjct: 30 VVFDSGDGVSHNVPIYEGYALPHAILRLDLAGRDLTDY 67
>SB_7187| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 349
Score = 31.9 bits (69), Expect = 0.61
Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
Frame = +1
Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
DE + G+ + P + G + NWD + +W F E V + P+++TE
Sbjct: 57 DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108
Score = 28.3 bits (60), Expect = 7.5
Identities = 21/75 (28%), Positives = 33/75 (44%)
Frame = +3
Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
HP A N + +E MT+I FE + ++ L+ Y RT +V+DSG
Sbjct: 102 HPVLLTEAPLNPKANREKMTQIMFETFNSPAMYVAIQAVLSLYASGRT----TGIVMDSG 157
Query: 666 YSFTYIVPYINGKKY 710
++ VP + Y
Sbjct: 158 DGVSHTVPIYEERGY 172
>SB_43858| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 517
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 616 LYSARSVAFIRNNDWHSYSSKNISVIASCIE 524
LYS R+ +I N DW S + IA C+E
Sbjct: 486 LYSNRAQCYINNRDWQSAADDCTRAIAGCLE 516
>SB_35100| Best HMM Match : TPR_2 (HMM E-Value=0.0013)
Length = 158
Score = 31.5 bits (68), Expect = 0.80
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = -3
Query: 616 LYSARSVAFIRNNDWHSYSSKNISVIASCIE 524
LYS R+ +I N DW S + IA C+E
Sbjct: 127 LYSNRAQCYINNRDWQSAADDCTRAIAGCLE 157
>SB_37671| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 708
Score = 30.3 bits (65), Expect = 1.8
Identities = 17/54 (31%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -2
Query: 236 PIYNKRSRSFSYLLFKGYR*-LLIRLDVHLLELGLKYYCKDVQNGNVIYLGSFK 78
P ++R + +LL +GY ++I D+H KY C ++NG + L +FK
Sbjct: 273 PSDSQRIQDIKFLLDEGYEDKIVIAHDIHTRHRLKKYECFAIRNGIQVVLQAFK 326
>SB_49315| Best HMM Match : Calreticulin (HMM E-Value=0)
Length = 1086
Score = 29.1 bits (62), Expect = 4.3
Identities = 21/63 (33%), Positives = 36/63 (57%)
Frame = -2
Query: 728 PYNRVFIFFAIYVWNYVSKTITGVNYNCAVIFMSPTIIVFSQICSIYP*QRLAFVFFEEY 549
P+N F+FF I+VW++ S G+ A+ F++P ++FS ++ P + + F E
Sbjct: 989 PFN-TFVFFRIFVWDFWSP--CGIE---AINFIAP-FLLFSN-SALNP---ILYFAFSEN 1037
Query: 548 FRH 540
FRH
Sbjct: 1038 FRH 1040
>SB_57511| Best HMM Match : EGF_CA (HMM E-Value=0)
Length = 879
Score = 28.3 bits (60), Expect = 7.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = -2
Query: 251 YRLRCPIYNKRSRSFSYLLF 192
Y C +Y +RSRSF +LLF
Sbjct: 397 YFSACSVYQRRSRSFHHLLF 416
>SB_34309| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 28.3 bits (60), Expect = 7.5
Identities = 13/26 (50%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
Frame = -2
Query: 146 ELGLKYY-CKDVQNGNVIYLGSFKYV 72
E LKYY C+D+QNG Y G +Y+
Sbjct: 86 EWKLKYYPCEDIQNGVFNYCGHTEYL 111
>SB_11023| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 669
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 396 PERFSSQLGHSKNRLGLHIQQRMLPSQLQ*HPADHNRALFNFASIQEAMTEIFFE 560
P ++ +G K R +QQ + SQ+ HP ++R + N ++ E T + F+
Sbjct: 155 PGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKYNDRRIVNDIALLELATPVQFD 209
Score = 28.3 bits (60), Expect = 7.5
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 396 PERFSSQLGHSKNRLGLHIQQRMLPSQLQ*HPADHNRALFNFASIQEAMTEIFFE 560
P ++ +G K R +QQ + SQ+ HP ++R + N ++ E T + F+
Sbjct: 484 PGGYTVVVGAHKKRGSTSVQQSLRLSQIIEHPKYNDRRIVNDIALLELATPVQFD 538
>SB_24298| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 159
Score = 27.9 bits (59), Expect = 9.9
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -2
Query: 779 TTRSLSMIRKHFPANINPYNRVFIFFAIYVWNYVSKTITGV 657
T+R + K AN+N + FI I WN VS I +
Sbjct: 93 TSRRTDISYKQLQANVNAFGMSFIPRTIRTWNLVSGDIAAL 133
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,081,283
Number of Sequences: 59808
Number of extensions: 462443
Number of successful extensions: 931
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 869
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 926
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2155861620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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