Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1406
         (786 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.           44   7e-06
U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.          43   1e-05
U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.          43   1e-05
U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.          43   1e-05
L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.       26   1.5  

>CR954256-1|CAJ14142.1|  376|Anopheles gambiae actin protein.
          Length = 376

 Score = 43.6 bits (98), Expect = 7e-06
 Identities = 30/92 (32%), Positives = 45/92 (48%)
 Frame = +3

Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
           HP     A  N  S +E MT+I FE +   ++       L+ Y   RT      VV+DSG
Sbjct: 102 HPVLLTEAPLNPKSNREKMTQIMFETFAAPAVYVAIQAVLSLYASGRT----TGVVLDSG 157

Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
              ++ VP   G     AI+R+D+ G+ LT++
Sbjct: 158 DGVSHTVPIYEGYALPHAILRMDLAGRDLTDY 189



 Score = 32.3 bits (70), Expect = 0.017
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
           DE +   G+  +  P + G + NWD  + +W   F  E   V   + P+++TE
Sbjct: 57  DEAQSKRGILTLKYPIEHGIITNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108


>U02964-1|AAA03444.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 45/92 (48%)
 Frame = +3

Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
           HP     A  N  + +E MT+I FE +   ++       L+ Y   RT      +V+DSG
Sbjct: 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVLDSG 157

Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
              ++ VP   G     AI+R+D+ G+ LT++
Sbjct: 158 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 189



 Score = 31.9 bits (69), Expect = 0.023
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
           DE +   G+  +  P + G + NWD  + +W   F  E   V   + P+++TE
Sbjct: 57  DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108


>U02933-1|AAA56882.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 45/92 (48%)
 Frame = +3

Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
           HP     A  N  + +E MT+I FE +   ++       L+ Y   RT      +V+DSG
Sbjct: 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVLDSG 157

Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
              ++ VP   G     AI+R+D+ G+ LT++
Sbjct: 158 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 189



 Score = 31.9 bits (69), Expect = 0.023
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
           DE +   G+  +  P + G + NWD  + +W   F  E   V   + P+++TE
Sbjct: 57  DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108


>U02930-1|AAA56881.1|  376|Anopheles gambiae actin 1D protein.
          Length = 376

 Score = 42.7 bits (96), Expect = 1e-05
 Identities = 28/92 (30%), Positives = 45/92 (48%)
 Frame = +3

Query: 486 HPADHNRALFNFASIQEAMTEIFFEEYECQSLLRINATDLAEYNYRRTHKNDCTVVVDSG 665
           HP     A  N  + +E MT+I FE +   ++       L+ Y   RT      +V+DSG
Sbjct: 102 HPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT----TGIVLDSG 157

Query: 666 YSFTYIVPYINGKKYKDAIIRIDVGGKVLTNH 761
              ++ VP   G     AI+R+D+ G+ LT++
Sbjct: 158 DGVSHTVPIYEGYALPHAILRLDLAGRDLTDY 189



 Score = 31.9 bits (69), Expect = 0.023
 Identities = 15/53 (28%), Positives = 26/53 (49%), Gaps = 1/53 (1%)
 Frame = +1

Query: 352 DECRDASGLFYI-LPFQKGFLVNWDTQKTVWDFIFSKECCPVNFNDTPLIITE 507
           DE +   G+  +  P + G + NWD  + +W   F  E   V   + P+++TE
Sbjct: 57  DEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEHPVLLTE 108


>L10440-1|AAA29360.1|  154|Anopheles gambiae transposase protein.
          Length = 154

 Score = 25.8 bits (54), Expect = 1.5
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +1

Query: 364 DASGLFYILPFQKGFLVNWDTQKTV 438
           DA G+F+I   QKG ++N D  K +
Sbjct: 79  DAHGIFFIEYLQKGKIINSDYYKAL 103


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 796,575
Number of Sequences: 2352
Number of extensions: 17133
Number of successful extensions: 46
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 42
length of database: 563,979
effective HSP length: 63
effective length of database: 415,803
effective search space used: 82328994
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)