BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1405X (488 letters) Database: spombe 5004 sequences; 2,362,478 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 39 4e-04 SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 37 0.001 SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 33 0.017 SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 31 0.071 SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.28 SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 28 0.66 SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 1.1 SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 2.7 SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.5 SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 4.6 SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 6.1 SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 6.1 SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 6.1 SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 6.1 SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.1 SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1 SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1 SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 8.1 SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 8.1 >SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces pombe|chr 2|||Manual Length = 475 Score = 39.1 bits (87), Expect = 4e-04 Identities = 14/26 (53%), Positives = 18/26 (69%) Frame = +1 Query: 76 MIVCKFFQQGYCRYGQNCRFEHVYGS 153 M+VCK+F Q CRYG NC+ +H S Sbjct: 1 MVVCKYFLQNRCRYGTNCKNQHTVPS 26 Score = 29.1 bits (62), Expect = 0.38 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 267 QWILSCYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNNTLE 389 QW + Y+ P I D+SPEE+R + Y++K N ++ Sbjct: 80 QWPFTGYSVVENLPSIYE-GDVSPEELRWWAYQAKATNNMQ 119 >SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharomyces pombe|chr 1|||Manual Length = 583 Score = 37.1 bits (82), Expect = 0.001 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%) Frame = +1 Query: 82 VCKFFQQGYCRYGQNCRFEHVY--GSKYTYHATTP 180 +CK+FQ+G C++G C EHV G K A P Sbjct: 69 ICKYFQKGNCKFGSKCALEHVLPDGRKVKTRAFAP 103 Score = 34.7 bits (76), Expect = 0.008 Identities = 12/21 (57%), Positives = 15/21 (71%) Frame = +1 Query: 79 IVCKFFQQGYCRYGQNCRFEH 141 + CKFF+QG C G+NC F H Sbjct: 39 VPCKFFRQGTCTSGKNCIFSH 59 >SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schizosaccharomyces pombe|chr 3|||Manual Length = 547 Score = 33.5 bits (73), Expect = 0.017 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = +1 Query: 79 IVCKFFQQGYCRYGQNCRFEH 141 + CKFF+ G C G+NC F H Sbjct: 45 VPCKFFRNGTCTAGENCPFSH 65 Score = 29.9 bits (64), Expect = 0.22 Identities = 8/20 (40%), Positives = 13/20 (65%) Frame = +1 Query: 82 VCKFFQQGYCRYGQNCRFEH 141 +CK+F +G C++G C H Sbjct: 73 ICKYFLKGNCKFGPKCALSH 92 >SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces pombe|chr 1|||Manual Length = 170 Score = 31.5 bits (68), Expect = 0.071 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 79 IVCKFFQQGYCRYGQNCRFEHVYGSK 156 +VCK + +G C+ G+ C F H Y K Sbjct: 52 VVCKHWLRGLCKKGEQCDFLHEYNLK 77 Score = 27.1 bits (57), Expect = 1.5 Identities = 9/21 (42%), Positives = 13/21 (61%) Frame = +1 Query: 82 VCKFFQQGYCRYGQNCRFEHV 144 VC ++ G+C G CR +HV Sbjct: 110 VCAWYNMGFCPLGPICRGKHV 130 >SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosaccharomyces pombe|chr 2|||Manual Length = 533 Score = 29.5 bits (63), Expect = 0.28 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%) Frame = +1 Query: 82 VCKFFQ-QGYCRYGQNCRFEHV 144 VCK ++ GYC YG C+F H+ Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHM 210 >SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosaccharomyces pombe|chr 2|||Manual Length = 404 Score = 28.3 bits (60), Expect = 0.66 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%) Frame = +1 Query: 85 CKFFQ-QGYCRYGQNCRFEH 141 CK +Q G CRYG C+F H Sbjct: 332 CKNWQISGTCRYGSKCQFAH 351 Score = 25.4 bits (53), Expect = 4.6 Identities = 9/17 (52%), Positives = 9/17 (52%) Frame = +1 Query: 91 FFQQGYCRYGQNCRFEH 141 F GYC YG C F H Sbjct: 373 FMMYGYCPYGLRCCFLH 389 >SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces pombe|chr 3|||Manual Length = 967 Score = 27.5 bits (58), Expect = 1.1 Identities = 12/33 (36%), Positives = 16/33 (48%) Frame = +3 Query: 282 CYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNN 380 CY P + K HD PE ++ ES+ NN Sbjct: 7 CYLPNSRKGRDVNFHDRGPETLKCLYDESEDNN 39 >SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 377 Score = 26.2 bits (55), Expect = 2.7 Identities = 11/34 (32%), Positives = 19/34 (55%) Frame = +1 Query: 43 LHIIIE*NYPIMIVCKFFQQGYCRYGQNCRFEHV 144 +HI N PI +F + G+C G +C+ +H+ Sbjct: 280 VHIHYSENAPICF--EFAKYGFCELGTSCKNQHI 311 >SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosaccharomyces pombe|chr 2|||Manual Length = 2609 Score = 25.8 bits (54), Expect = 3.5 Identities = 9/22 (40%), Positives = 16/22 (72%) Frame = -2 Query: 154 WNRKHVQIYNFGRIGSSLAGRT 89 W R+ + +N+ +I ++LAGRT Sbjct: 1922 WERREISNFNYLQIVNTLAGRT 1943 >SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces pombe|chr 1|||Manual Length = 216 Score = 25.4 bits (53), Expect = 4.6 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%) Frame = +1 Query: 85 CKFFQQ-GYCRYGQNCRFEHV 144 C F+ + G CR+G+ C +HV Sbjct: 18 CSFYYKIGACRHGERCSRKHV 38 >SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr 3|||Manual Length = 323 Score = 25.0 bits (52), Expect = 6.1 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%) Frame = +1 Query: 184 PVVTNTEHTDEQL-----VNQVQTDVKSVYTEANGYSRVMHPTMRSR*FREFMIYHQRK* 348 P +T E+ DE++ ++Q KS + + Y ++ TM+ R + EF + R Sbjct: 256 PTMTVDEYLDEEMKRGNIISQKDNPPKSDSDDEDDYEKLDAKTMKDRYWDEFKEANPRGS 315 Query: 349 GFLYMNR 369 G +NR Sbjct: 316 GNTMVNR 322 >SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity factor complex subunit Rna14|Schizosaccharomyces pombe|chr 1|||Manual Length = 733 Score = 25.0 bits (52), Expect = 6.1 Identities = 9/19 (47%), Positives = 15/19 (78%) Frame = +3 Query: 423 ETRQKYEQLLQPTPHLIKV 479 E R+ YEQ+L+P P++ +V Sbjct: 89 ELRETYEQMLRPFPYVPRV 107 >SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces pombe|chr 2|||Manual Length = 412 Score = 25.0 bits (52), Expect = 6.1 Identities = 10/20 (50%), Positives = 12/20 (60%) Frame = +3 Query: 405 INNLTRETRQKYEQLLQPTP 464 +NNLT +T QL QP P Sbjct: 298 VNNLTYQTADAKSQLTQPVP 317 >SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|Schizosaccharomyces pombe|chr 1|||Manual Length = 258 Score = 25.0 bits (52), Expect = 6.1 Identities = 12/26 (46%), Positives = 15/26 (57%) Frame = +3 Query: 411 NLTRETRQKYEQLLQPTPHLIKVLRS 488 +L R + KY LQ HLIK+L S Sbjct: 164 DLVRISSDKYSSALQNKYHLIKILTS 189 >SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||Manual Length = 131 Score = 25.0 bits (52), Expect = 6.1 Identities = 12/39 (30%), Positives = 19/39 (48%) Frame = +3 Query: 339 EEMRLFIYESKRNNTLEQAIAYINNLTRETRQKYEQLLQ 455 E + + + + + L + I I L + KYEQLLQ Sbjct: 7 EVLESYFWTLQESIPLRRRIREIRELQERNKNKYEQLLQ 45 >SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 977 Score = 24.6 bits (51), Expect = 8.1 Identities = 12/59 (20%), Positives = 27/59 (45%) Frame = +1 Query: 106 YCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVYTEANGYSR 282 Y + N + + + Y P + +TD+ L+ Q+DVK+++ N +++ Sbjct: 252 YSTFYANSQVIDKFSEYFAYVDQDPCHIRVLNANTDQSLILYTQSDVKNLHFGKNKHTK 310 >SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|||Manual Length = 328 Score = 24.6 bits (51), Expect = 8.1 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%) Frame = +1 Query: 148 GSKYTYHATTP-QPVVTNTEHTDEQLVNQVQTDVKSVYTEANGYSRVMHPTM 300 G + YH VTNT H ++Q ++ V T S E S + T+ Sbjct: 248 GKSFLYHMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPSLSEYLSSTL 299 >SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharomyces pombe|chr 1|||Manual Length = 388 Score = 24.6 bits (51), Expect = 8.1 Identities = 8/24 (33%), Positives = 11/24 (45%) Frame = +1 Query: 70 PIMIVCKFFQQGYCRYGQNCRFEH 141 P C +F +G C G C + H Sbjct: 112 PGSFFCLYFARGMCSEGSKCEYLH 135 >SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual Length = 526 Score = 24.6 bits (51), Expect = 8.1 Identities = 11/39 (28%), Positives = 21/39 (53%) Frame = +3 Query: 294 YNEKPIIPGIHDLSPEEMRLFIYESKRNNTLEQAIAYIN 410 ++E PI+ G + + RL IY+ + +E AY++ Sbjct: 99 WDEGPIVGGPYGPYEQSSRLQIYQKYAQHLIETGRAYVS 137 Database: spombe Posted date: Oct 4, 2007 10:57 AM Number of letters in database: 2,362,478 Number of sequences in database: 5004 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 1,907,756 Number of Sequences: 5004 Number of extensions: 37019 Number of successful extensions: 122 Number of sequences better than 10.0: 19 Number of HSP's better than 10.0 without gapping: 114 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 122 length of database: 2,362,478 effective HSP length: 68 effective length of database: 2,022,206 effective search space used: 190087364 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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