Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1405X
(488 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces... 39 4e-04
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo... 37 0.001
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz... 33 0.017
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ... 31 0.071
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch... 29 0.28
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar... 28 0.66
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces... 27 1.1
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ... 26 2.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 26 3.5
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po... 25 4.6
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 25 6.1
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit... 25 6.1
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces... 25 6.1
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S... 25 6.1
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 25 6.1
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.1
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom... 25 8.1
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos... 25 8.1
>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 475
Score = 39.1 bits (87), Expect = 4e-04
Identities = 14/26 (53%), Positives = 18/26 (69%)
Frame = +1
Query: 76 MIVCKFFQQGYCRYGQNCRFEHVYGS 153
M+VCK+F Q CRYG NC+ +H S
Sbjct: 1 MVVCKYFLQNRCRYGTNCKNQHTVPS 26
Score = 29.1 bits (62), Expect = 0.38
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 267 QWILSCYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNNTLE 389
QW + Y+ P I D+SPEE+R + Y++K N ++
Sbjct: 80 QWPFTGYSVVENLPSIYE-GDVSPEELRWWAYQAKATNNMQ 119
>SPAC3A11.02 |cps3|mug188|zinc finger protein
Cps3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 583
Score = 37.1 bits (82), Expect = 0.001
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVY--GSKYTYHATTP 180
+CK+FQ+G C++G C EHV G K A P
Sbjct: 69 ICKYFQKGNCKFGSKCALEHVLPDGRKVKTRAFAP 103
Score = 34.7 bits (76), Expect = 0.008
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH 141
+ CKFF+QG C G+NC F H
Sbjct: 39 VPCKFFRQGTCTSGKNCIFSH 59
>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 547
Score = 33.5 bits (73), Expect = 0.017
Identities = 11/21 (52%), Positives = 14/21 (66%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH 141
+ CKFF+ G C G+NC F H
Sbjct: 45 VPCKFFRNGTCTAGENCPFSH 65
Score = 29.9 bits (64), Expect = 0.22
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+CK+F +G C++G C H
Sbjct: 73 ICKYFLKGNCKFGPKCALSH 92
>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 170
Score = 31.5 bits (68), Expect = 0.071
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEHVYGSK 156
+VCK + +G C+ G+ C F H Y K
Sbjct: 52 VVCKHWLRGLCKKGEQCDFLHEYNLK 77
Score = 27.1 bits (57), Expect = 1.5
Identities = 9/21 (42%), Positives = 13/21 (61%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHV 144
VC ++ G+C G CR +HV
Sbjct: 110 VCAWYNMGFCPLGPICRGKHV 130
>SPBC13E7.02 |cwf24||GCN5-related N
acetyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 533
Score = 29.5 bits (63), Expect = 0.28
Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = +1
Query: 82 VCKFFQ-QGYCRYGQNCRFEHV 144
VCK ++ GYC YG C+F H+
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHM 210
>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 404
Score = 28.3 bits (60), Expect = 0.66
Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQ-QGYCRYGQNCRFEH 141
CK +Q G CRYG C+F H
Sbjct: 332 CKNWQISGTCRYGSKCQFAH 351
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/17 (52%), Positives = 9/17 (52%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH 141
F GYC YG C F H
Sbjct: 373 FMMYGYCPYGLRCCFLH 389
>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 967
Score = 27.5 bits (58), Expect = 1.1
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +3
Query: 282 CYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNN 380
CY P + K HD PE ++ ES+ NN
Sbjct: 7 CYLPNSRKGRDVNFHDRGPETLKCLYDESEDNN 39
>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 377
Score = 26.2 bits (55), Expect = 2.7
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +1
Query: 43 LHIIIE*NYPIMIVCKFFQQGYCRYGQNCRFEHV 144
+HI N PI +F + G+C G +C+ +H+
Sbjct: 280 VHIHYSENAPICF--EFAKYGFCELGTSCKNQHI 311
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = -2
Query: 154 WNRKHVQIYNFGRIGSSLAGRT 89
W R+ + +N+ +I ++LAGRT
Sbjct: 1922 WERREISNFNYLQIVNTLAGRT 1943
>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 216
Score = 25.4 bits (53), Expect = 4.6
Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEHV 144
C F+ + G CR+G+ C +HV
Sbjct: 18 CSFYYKIGACRHGERCSRKHV 38
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 25.0 bits (52), Expect = 6.1
Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
Frame = +1
Query: 184 PVVTNTEHTDEQL-----VNQVQTDVKSVYTEANGYSRVMHPTMRSR*FREFMIYHQRK* 348
P +T E+ DE++ ++Q KS + + Y ++ TM+ R + EF + R
Sbjct: 256 PTMTVDEYLDEEMKRGNIISQKDNPPKSDSDDEDDYEKLDAKTMKDRYWDEFKEANPRGS 315
Query: 349 GFLYMNR 369
G +NR
Sbjct: 316 GNTMVNR 322
>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
factor complex subunit Rna14|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 733
Score = 25.0 bits (52), Expect = 6.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = +3
Query: 423 ETRQKYEQLLQPTPHLIKV 479
E R+ YEQ+L+P P++ +V
Sbjct: 89 ELRETYEQMLRPFPYVPRV 107
>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 412
Score = 25.0 bits (52), Expect = 6.1
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = +3
Query: 405 INNLTRETRQKYEQLLQPTP 464
+NNLT +T QL QP P
Sbjct: 298 VNNLTYQTADAKSQLTQPVP 317
>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
S24|Schizosaccharomyces pombe|chr 1|||Manual
Length = 258
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 411 NLTRETRQKYEQLLQPTPHLIKVLRS 488
+L R + KY LQ HLIK+L S
Sbjct: 164 DLVRISSDKYSSALQNKYHLIKILTS 189
>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 131
Score = 25.0 bits (52), Expect = 6.1
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +3
Query: 339 EEMRLFIYESKRNNTLEQAIAYINNLTRETRQKYEQLLQ 455
E + + + + + L + I I L + KYEQLLQ
Sbjct: 7 EVLESYFWTLQESIPLRRRIREIRELQERNKNKYEQLLQ 45
>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 977
Score = 24.6 bits (51), Expect = 8.1
Identities = 12/59 (20%), Positives = 27/59 (45%)
Frame = +1
Query: 106 YCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVYTEANGYSR 282
Y + N + + + Y P + +TD+ L+ Q+DVK+++ N +++
Sbjct: 252 YSTFYANSQVIDKFSEYFAYVDQDPCHIRVLNANTDQSLILYTQSDVKNLHFGKNKHTK 310
>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 328
Score = 24.6 bits (51), Expect = 8.1
Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
Frame = +1
Query: 148 GSKYTYHATTP-QPVVTNTEHTDEQLVNQVQTDVKSVYTEANGYSRVMHPTM 300
G + YH VTNT H ++Q ++ V T S E S + T+
Sbjct: 248 GKSFLYHMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPSLSEYLSSTL 299
>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 24.6 bits (51), Expect = 8.1
Identities = 8/24 (33%), Positives = 11/24 (45%)
Frame = +1
Query: 70 PIMIVCKFFQQGYCRYGQNCRFEH 141
P C +F +G C G C + H
Sbjct: 112 PGSFFCLYFARGMCSEGSKCEYLH 135
>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
Length = 526
Score = 24.6 bits (51), Expect = 8.1
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = +3
Query: 294 YNEKPIIPGIHDLSPEEMRLFIYESKRNNTLEQAIAYIN 410
++E PI+ G + + RL IY+ + +E AY++
Sbjct: 99 WDEGPIVGGPYGPYEQSSRLQIYQKYAQHLIETGRAYVS 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,756
Number of Sequences: 5004
Number of extensions: 37019
Number of successful extensions: 122
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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