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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1405X
         (488 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    39   4e-04
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    37   0.001
SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger protein|Schiz...    33   0.017
SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces ...    31   0.071
SPBC13E7.02 |cwf24||GCN5-related N acetyltransferase|Schizosacch...    29   0.28 
SPBC1718.07c |zfs1|moc4|transcription factor Zfs1 |Schizosacchar...    28   0.66 
SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces...    27   1.1  
SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr ...    26   2.7  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    26   3.5  
SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces po...    25   4.6  
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr...    25   6.1  
SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificit...    25   6.1  
SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces...    25   6.1  
SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit S24|S...    25   6.1  
SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    25   6.1  
SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    25   8.1  
SPAC3A12.11c |cwf2|prp3|RNA-binding protein Cwf2|Schizosaccharom...    25   8.1  
SPAPB1A10.11c |||glutamyl-tRNA synthetase, mitochondrial|Schizos...    25   8.1  

>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 39.1 bits (87), Expect = 4e-04
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +1

Query: 76  MIVCKFFQQGYCRYGQNCRFEHVYGS 153
           M+VCK+F Q  CRYG NC+ +H   S
Sbjct: 1   MVVCKYFLQNRCRYGTNCKNQHTVPS 26



 Score = 29.1 bits (62), Expect = 0.38
 Identities = 14/41 (34%), Positives = 23/41 (56%)
 Frame = +3

Query: 267 QWILSCYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNNTLE 389
           QW  + Y+     P I    D+SPEE+R + Y++K  N ++
Sbjct: 80  QWPFTGYSVVENLPSIYE-GDVSPEELRWWAYQAKATNNMQ 119


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 37.1 bits (82), Expect = 0.001
 Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = +1

Query: 82  VCKFFQQGYCRYGQNCRFEHVY--GSKYTYHATTP 180
           +CK+FQ+G C++G  C  EHV   G K    A  P
Sbjct: 69  ICKYFQKGNCKFGSKCALEHVLPDGRKVKTRAFAP 103



 Score = 34.7 bits (76), Expect = 0.008
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +1

Query: 79  IVCKFFQQGYCRYGQNCRFEH 141
           + CKFF+QG C  G+NC F H
Sbjct: 39  VPCKFFRQGTCTSGKNCIFSH 59


>SPCC1739.01 ||SPCC1906.05|zf-CCCH type zinc finger
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 547

 Score = 33.5 bits (73), Expect = 0.017
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +1

Query: 79  IVCKFFQQGYCRYGQNCRFEH 141
           + CKFF+ G C  G+NC F H
Sbjct: 45  VPCKFFRNGTCTAGENCPFSH 65



 Score = 29.9 bits (64), Expect = 0.22
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 82  VCKFFQQGYCRYGQNCRFEH 141
           +CK+F +G C++G  C   H
Sbjct: 73  ICKYFLKGNCKFGPKCALSH 92


>SPAC227.08c |yth1||zinc finger protein Yth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 170

 Score = 31.5 bits (68), Expect = 0.071
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 79  IVCKFFQQGYCRYGQNCRFEHVYGSK 156
           +VCK + +G C+ G+ C F H Y  K
Sbjct: 52  VVCKHWLRGLCKKGEQCDFLHEYNLK 77



 Score = 27.1 bits (57), Expect = 1.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)
 Frame = +1

Query: 82  VCKFFQQGYCRYGQNCRFEHV 144
           VC ++  G+C  G  CR +HV
Sbjct: 110 VCAWYNMGFCPLGPICRGKHV 130


>SPBC13E7.02 |cwf24||GCN5-related N
           acetyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 533

 Score = 29.5 bits (63), Expect = 0.28
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +1

Query: 82  VCKFFQ-QGYCRYGQNCRFEHV 144
           VCK ++  GYC YG  C+F H+
Sbjct: 189 VCKDYKLTGYCGYGDTCKFLHM 210


>SPBC1718.07c |zfs1|moc4|transcription factor Zfs1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 404

 Score = 28.3 bits (60), Expect = 0.66
 Identities = 11/20 (55%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
 Frame = +1

Query: 85  CKFFQ-QGYCRYGQNCRFEH 141
           CK +Q  G CRYG  C+F H
Sbjct: 332 CKNWQISGTCRYGSKCQFAH 351



 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = +1

Query: 91  FFQQGYCRYGQNCRFEH 141
           F   GYC YG  C F H
Sbjct: 373 FMMYGYCPYGLRCCFLH 389


>SPCC970.08 |||inositol polyphosphate kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 967

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 12/33 (36%), Positives = 16/33 (48%)
 Frame = +3

Query: 282 CYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNN 380
           CY P + K      HD  PE ++    ES+ NN
Sbjct: 7   CYLPNSRKGRDVNFHDRGPETLKCLYDESEDNN 39


>SPBC337.12 |||human ZC3H3 homolog|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 377

 Score = 26.2 bits (55), Expect = 2.7
 Identities = 11/34 (32%), Positives = 19/34 (55%)
 Frame = +1

Query: 43  LHIIIE*NYPIMIVCKFFQQGYCRYGQNCRFEHV 144
           +HI    N PI    +F + G+C  G +C+ +H+
Sbjct: 280 VHIHYSENAPICF--EFAKYGFCELGTSCKNQHI 311


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
            homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -2

Query: 154  WNRKHVQIYNFGRIGSSLAGRT 89
            W R+ +  +N+ +I ++LAGRT
Sbjct: 1922 WERREISNFNYLQIVNTLAGRT 1943


>SPAP8A3.06 |||U2AF small subunit, U2AF-23|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 216

 Score = 25.4 bits (53), Expect = 4.6
 Identities = 9/21 (42%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
 Frame = +1

Query: 85  CKFFQQ-GYCRYGQNCRFEHV 144
           C F+ + G CR+G+ C  +HV
Sbjct: 18  CSFYYKIGACRHGERCSRKHV 38


>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 323

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 18/67 (26%), Positives = 32/67 (47%), Gaps = 5/67 (7%)
 Frame = +1

Query: 184 PVVTNTEHTDEQL-----VNQVQTDVKSVYTEANGYSRVMHPTMRSR*FREFMIYHQRK* 348
           P +T  E+ DE++     ++Q     KS   + + Y ++   TM+ R + EF   + R  
Sbjct: 256 PTMTVDEYLDEEMKRGNIISQKDNPPKSDSDDEDDYEKLDAKTMKDRYWDEFKEANPRGS 315

Query: 349 GFLYMNR 369
           G   +NR
Sbjct: 316 GNTMVNR 322


>SPAC6F12.17 |rna14||mRNA cleavage and polyadenylation specificity
           factor complex subunit Rna14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 733

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/19 (47%), Positives = 15/19 (78%)
 Frame = +3

Query: 423 ETRQKYEQLLQPTPHLIKV 479
           E R+ YEQ+L+P P++ +V
Sbjct: 89  ELRETYEQMLRPFPYVPRV 107


>SPBC2G2.16 |||mannose-6-phosphate isomerase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 412

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 10/20 (50%), Positives = 12/20 (60%)
 Frame = +3

Query: 405 INNLTRETRQKYEQLLQPTP 464
           +NNLT +T     QL QP P
Sbjct: 298 VNNLTYQTADAKSQLTQPVP 317


>SPAC2F7.15 |rsm24||mitochondrial ribosomal protein subunit
           S24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 258

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +3

Query: 411 NLTRETRQKYEQLLQPTPHLIKVLRS 488
           +L R +  KY   LQ   HLIK+L S
Sbjct: 164 DLVRISSDKYSSALQNKYHLIKILTS 189


>SPBC23G7.14 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 131

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = +3

Query: 339 EEMRLFIYESKRNNTLEQAIAYINNLTRETRQKYEQLLQ 455
           E +  + +  + +  L + I  I  L    + KYEQLLQ
Sbjct: 7   EVLESYFWTLQESIPLRRRIREIRELQERNKNKYEQLLQ 45


>SPAC12G12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 12/59 (20%), Positives = 27/59 (45%)
 Frame = +1

Query: 106 YCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVYTEANGYSR 282
           Y  +  N +    +   + Y    P  +     +TD+ L+   Q+DVK+++   N +++
Sbjct: 252 YSTFYANSQVIDKFSEYFAYVDQDPCHIRVLNANTDQSLILYTQSDVKNLHFGKNKHTK 310


>SPAC23H4.16c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 328

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 15/52 (28%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = +1

Query: 148 GSKYTYHATTP-QPVVTNTEHTDEQLVNQVQTDVKSVYTEANGYSRVMHPTM 300
           G  + YH        VTNT H ++Q ++ V T   S   E    S  +  T+
Sbjct: 248 GKSFLYHMLVSLHNQVTNTSHLEKQRISTVATLFISKLFEIPSLSEYLSSTL 299


>SPAC3A12.11c |cwf2|prp3|RNA-binding protein
           Cwf2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 8/24 (33%), Positives = 11/24 (45%)
 Frame = +1

Query: 70  PIMIVCKFFQQGYCRYGQNCRFEH 141
           P    C +F +G C  G  C + H
Sbjct: 112 PGSFFCLYFARGMCSEGSKCEYLH 135


>SPAPB1A10.11c |||glutamyl-tRNA synthetase,
           mitochondrial|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 526

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 11/39 (28%), Positives = 21/39 (53%)
 Frame = +3

Query: 294 YNEKPIIPGIHDLSPEEMRLFIYESKRNNTLEQAIAYIN 410
           ++E PI+ G +    +  RL IY+    + +E   AY++
Sbjct: 99  WDEGPIVGGPYGPYEQSSRLQIYQKYAQHLIETGRAYVS 137


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,907,756
Number of Sequences: 5004
Number of extensions: 37019
Number of successful extensions: 122
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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