Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1405X
(488 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038) 38 0.006
SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.) 37 0.010
SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24) 33 0.096
SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.) 33 0.17
SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10) 32 0.22
SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017) 32 0.29
SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035) 30 0.89
SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 0.89
SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07) 30 1.2
SB_29448| Best HMM Match : DnaJ (HMM E-Value=0.00022) 30 1.2
SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.2
SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27) 29 1.6
SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 1.6
SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27) 29 2.1
SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05) 29 2.7
SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 3.6
SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6) 28 4.7
SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7
SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4) 27 6.3
SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1) 27 6.3
SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 6.3
SB_1927| Best HMM Match : Laminin_A (HMM E-Value=0.00021) 27 6.3
SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09) 27 8.3
SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 8.3
>SB_23461| Best HMM Match : DUF504 (HMM E-Value=0.0038)
Length = 657
Score = 37.5 bits (83), Expect = 0.006
Identities = 18/36 (50%), Positives = 22/36 (61%)
Frame = +1
Query: 85 CKFFQQGYCRYGQNCRFEHVYGSKYTYHATTPQPVV 192
CKFF G CRYG+ C +H+ GS T +TT VV
Sbjct: 37 CKFFLLGQCRYGEQCFNKHITGS--TQPSTTTAVVV 70
>SB_2302| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 445
Score = 36.7 bits (81), Expect = 0.010
Identities = 25/80 (31%), Positives = 34/80 (42%), Gaps = 2/80 (2%)
Frame = +1
Query: 73 IMIVCKFFQQGYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTD--EQLVNQVQTDV 246
I+ CK+ YCR FE Y ++ HA P H D + L Q ++
Sbjct: 11 IVFQCKYAVLRYCRQAV---FERPYNGRFASHAAFPARRNNPKNHYDVMKLLPTATQREI 67
Query: 247 KSVYTEANGYSRVMHPTMRS 306
KS Y E SR+ HP + S
Sbjct: 68 KSAYYE---LSRIYHPDLNS 84
>SB_13439| Best HMM Match : DnaJ (HMM E-Value=5.9e-24)
Length = 565
Score = 33.5 bits (73), Expect = 0.096
Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 2/67 (2%)
Frame = +1
Query: 112 RYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTD--EQLVNQVQTDVKSVYTEANGYSRV 285
RY + FE Y ++ HA P H D + L Q ++KS Y E SR+
Sbjct: 168 RYCRQAVFERPYNGRFASHAAFPARRNNPKNHYDVMKLLPTATQREIKSAYYE---LSRI 224
Query: 286 MHPTMRS 306
HP + S
Sbjct: 225 YHPDLNS 231
>SB_53037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 499
Score = 32.7 bits (71), Expect = 0.17
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
VC FQ+G CR+G+ C+F H
Sbjct: 110 VCWKFQKGKCRFGEKCKFVH 129
>SB_282| Best HMM Match : zf-CCCH (HMM E-Value=2.4e-10)
Length = 508
Score = 32.3 bits (70), Expect = 0.22
Identities = 11/21 (52%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
Frame = +1
Query: 82 VCKFF-QQGYCRYGQNCRFEH 141
VC+F+ ++G CR+G+ CRF H
Sbjct: 42 VCRFYAKKGNCRFGEKCRFVH 62
>SB_13937| Best HMM Match : zf-CCCH (HMM E-Value=0.0017)
Length = 1495
Score = 31.9 bits (69), Expect = 0.29
Identities = 12/21 (57%), Positives = 15/21 (71%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH 141
+ CKFF CRYG+ CRF+H
Sbjct: 900 VPCKFFPT--CRYGKECRFKH 918
>SB_58169| Best HMM Match : zf-CCCH (HMM E-Value=0.0035)
Length = 289
Score = 30.3 bits (65), Expect = 0.89
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C+F+ +G CRYG C+ H
Sbjct: 162 ICRFYLKGNCRYGYLCKKSH 181
>SB_47269| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 720
Score = 30.3 bits (65), Expect = 0.89
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 64 NYPIMIVCKFFQQGYCRYGQNCRFEH 141
N ++ VC ++ +G C +GQ CR H
Sbjct: 93 NCGMLHVCPYYIKGKCAHGQKCRLSH 118
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C F+ +G C YG NC H
Sbjct: 295 ICGFYLRGCCNYGNNCMNHH 314
Score = 29.1 bits (62), Expect = 2.1
Identities = 9/30 (30%), Positives = 17/30 (56%)
Frame = +1
Query: 70 PIMIVCKFFQQGYCRYGQNCRFEHVYGSKY 159
P + VC+ F G C++G C+ H + ++
Sbjct: 183 PFLHVCQHFVDGKCKFGDTCKRVHHFKEQH 212
>SB_34807| Best HMM Match : zf-CCCH (HMM E-Value=4.6e-07)
Length = 505
Score = 29.9 bits (64), Expect = 1.2
Identities = 10/21 (47%), Positives = 14/21 (66%), Gaps = 1/21 (4%)
Frame = +1
Query: 82 VCKFFQ-QGYCRYGQNCRFEH 141
+C++F GYC YG C+F H
Sbjct: 17 LCRYFSANGYCFYGDQCQFVH 37
>SB_29448| Best HMM Match : DnaJ (HMM E-Value=0.00022)
Length = 118
Score = 29.9 bits (64), Expect = 1.2
Identities = 20/67 (29%), Positives = 28/67 (41%), Gaps = 2/67 (2%)
Frame = +1
Query: 112 RYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTD--EQLVNQVQTDVKSVYTEANGYSRV 285
RY + FE Y ++ HA P H D + L ++KS Y E SR+
Sbjct: 45 RYCRQAVFERPYNGRFASHAAFPARRNNPKYHYDVMKLLPTATLREIKSAYYE---LSRI 101
Query: 286 MHPTMRS 306
HP + S
Sbjct: 102 YHPDLNS 108
>SB_3180| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 351
Score = 29.9 bits (64), Expect = 1.2
Identities = 13/44 (29%), Positives = 21/44 (47%)
Frame = +1
Query: 106 YCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQ 237
Y + +C F++V G + ++TPQP +T T Q Q
Sbjct: 218 YAKVNFSCVFDNVTGVEPPRQSSTPQPKITGTSQPSNPTATQPQ 261
>SB_59087| Best HMM Match : ig (HMM E-Value=1.5e-27)
Length = 955
Score = 29.5 bits (63), Expect = 1.6
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -2
Query: 178 ELLHDMCIWNRKHVQIYNFGRIG 110
ELL D C+WN KH ++Y + G
Sbjct: 267 ELLTDNCLWNCKHRRVYEKHKAG 289
>SB_49233| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 309
Score = 29.5 bits (63), Expect = 1.6
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVYG 150
+C+ +Q+G C G C+F H G
Sbjct: 37 ICRDYQRGVCNRGGKCKFRHPEG 59
>SB_45794| Best HMM Match : zf-CCCH (HMM E-Value=3.1e-27)
Length = 527
Score = 29.1 bits (62), Expect = 2.1
Identities = 10/23 (43%), Positives = 16/23 (69%), Gaps = 1/23 (4%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVY 147
+C+ F++ G C+YG C+F H Y
Sbjct: 159 LCRPFEESGTCKYGDKCQFAHGY 181
>SB_28644| Best HMM Match : zf-CCCH (HMM E-Value=1.5e-05)
Length = 267
Score = 28.7 bits (61), Expect = 2.7
Identities = 8/19 (42%), Positives = 13/19 (68%)
Frame = +1
Query: 85 CKFFQQGYCRYGQNCRFEH 141
C+ F +G C +G NC++ H
Sbjct: 141 CRHFLKGNCWHGDNCKYSH 159
>SB_34627| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1925
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 SKYTYHATTPQPVVTNTEH 207
S Y H T+P PV+TN H
Sbjct: 1433 SHYQQHQTSPNPVITNNTH 1451
Score = 28.3 bits (60), Expect = 3.6
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +1
Query: 151 SKYTYHATTPQPVVTNTEH 207
S Y H T+P PV+TN H
Sbjct: 1480 SHYQQHQTSPNPVITNNTH 1498
>SB_36759| Best HMM Match : Tryp_alpha_amyl (HMM E-Value=3.6)
Length = 357
Score = 27.9 bits (59), Expect = 4.7
Identities = 13/38 (34%), Positives = 21/38 (55%)
Frame = +3
Query: 3 FTYIPTYLPCTYLITYYN*IKLSNYDCLQVLPARLLPI 116
+ YI L C +I+ ++ I +S Y C VLP R + +
Sbjct: 317 YRYIEVPLYCRIVISMFHCIAVSLYRCSTVLPYRYIEV 354
>SB_106| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 362
Score = 27.9 bits (59), Expect = 4.7
Identities = 9/23 (39%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
Frame = +1
Query: 85 CKFFQQGY--CRYGQNCRFEHVY 147
CK+F++G C +G +C ++H Y
Sbjct: 263 CKYFREGKGTCPFGSSCFYKHAY 285
>SB_28543| Best HMM Match : DUF1337 (HMM E-Value=2.4)
Length = 238
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/52 (28%), Positives = 28/52 (53%), Gaps = 2/52 (3%)
Frame = +3
Query: 333 SPEEMRLFIYESK--RNNTLEQAIAYINNLTRETRQKYEQLLQPTPHLIKVL 482
S +++ F+ E K N E + + L ++ + KYEQ+++ +LIK L
Sbjct: 20 SKSKLKAFVEELKAEEGNLEENNLKERSKLEKDLKAKYEQVIETKNYLIKKL 71
>SB_51415| Best HMM Match : zf-CCCH (HMM E-Value=1.1)
Length = 332
Score = 27.5 bits (58), Expect = 6.3
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +1
Query: 88 KFFQQGYCRYGQNCRFEH 141
K+F + C+Y CRF H
Sbjct: 222 KYFHRSPCKYSDGCRFSH 239
>SB_49037| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 2142
Score = 27.5 bits (58), Expect = 6.3
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNT 201
I C+FF +G C G C + H + + T + V ++
Sbjct: 1349 IPCRFFAKGNCLKGDRCLYLHAQEASHPMPPTFTETVTCSS 1389
>SB_1927| Best HMM Match : Laminin_A (HMM E-Value=0.00021)
Length = 188
Score = 27.5 bits (58), Expect = 6.3
Identities = 15/39 (38%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 163 YHATTP-QPVVTNTEHTDEQLVNQVQTDVKSVYTEANGY 276
Y TP QP+ T EQ+ +T SVY + NGY
Sbjct: 34 YKLFTPGQPIQPGTLSVLEQIPGMTETADMSVYLQENGY 72
>SB_24485| Best HMM Match : zf-CCCH (HMM E-Value=3e-09)
Length = 321
Score = 27.1 bits (57), Expect = 8.3
Identities = 8/21 (38%), Positives = 16/21 (76%), Gaps = 1/21 (4%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEH 141
+CK +++ G+C +G +C+F H
Sbjct: 183 ICKDYKETGFCGFGDSCKFLH 203
>SB_24938| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 550
Score = 27.1 bits (57), Expect = 8.3
Identities = 7/20 (35%), Positives = 13/20 (65%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C F+ +G C+ G+ C + H
Sbjct: 236 ICSFWVKGECKRGEECPYRH 255
>SB_15868| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1103
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 136 EHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSV 255
E + G Y H P V NT+ +D+Q + ++T + +V
Sbjct: 603 EAICGKTYDEHVIRPFFSVDNTKSSDDQGIQDLKTKIANV 642
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,122,158
Number of Sequences: 59808
Number of extensions: 277170
Number of successful extensions: 699
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 637
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 698
length of database: 16,821,457
effective HSP length: 77
effective length of database: 12,216,241
effective search space used: 1038380485
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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