Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1405X
         (488 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450 monoo...    23   2.3  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   9.3  
AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor prot...    21   9.3  

>DQ244074-1|ABB36784.1|  517|Apis mellifera cytochrome P450
           monooxygenase protein.
          Length = 517

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 9/29 (31%), Positives = 14/29 (48%)
 Frame = +3

Query: 249 ISLHGSQWILSCYAPYNEKPIIPGIHDLS 335
           + + G++WI SC   Y    I     DL+
Sbjct: 59  LPIFGTRWIFSCIGYYKLNKIHDAYKDLN 87


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 109 CRYGQNCRFE 138
           C+YG NC  +
Sbjct: 223 CKYGNNCEID 232


>AB095514-1|BAC76336.1|   72|Apis mellifera ecdyson receptor
           protein.
          Length = 72

 Score = 20.6 bits (41), Expect = 9.3
 Identities = 5/10 (50%), Positives = 7/10 (70%)
 Frame = +1

Query: 109 CRYGQNCRFE 138
           C+YG NC  +
Sbjct: 20  CKYGNNCEID 29


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,460
Number of Sequences: 438
Number of extensions: 2937
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13421061
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)