Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1405X
(488 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein ... 39 0.002
At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein ... 36 0.011
At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein ... 36 0.011
At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein ... 36 0.011
At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein ... 36 0.011
At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein ... 36 0.015
At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein ... 35 0.034
At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein ... 34 0.045
At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.045
At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING ... 34 0.045
At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein ... 33 0.10
At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein ... 33 0.14
At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein ... 33 0.14
At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein ... 33 0.14
At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein ... 32 0.18
At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein ... 32 0.18
At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein ... 32 0.24
At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1 pro... 31 0.32
At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2 pro... 31 0.42
At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing ... 31 0.42
At3g18640.1 68416.m02368 zinc finger protein-related contains si... 31 0.42
At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.55
At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.55
At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein ... 31 0.55
At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein ... 31 0.55
At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein ... 31 0.55
At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING ... 31 0.55
At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4 pro... 30 0.73
At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing ... 30 0.73
At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family... 30 0.73
At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3 pro... 30 0.96
At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein ... 29 1.3
At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein ... 29 1.3
At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein ... 29 1.7
At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein ... 29 1.7
At1g29570.1 68414.m03616 zinc finger protein-related contains si... 29 1.7
At1g02070.1 68414.m00129 expressed protein 29 1.7
At3g12130.1 68416.m01509 KH domain-containing protein / zinc fin... 28 2.9
At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein ... 28 2.9
At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein ... 28 2.9
At1g44900.1 68414.m05144 DNA replication licensing factor, putat... 28 2.9
At5g31753.1 68418.m03770 hypothetical protein 28 3.9
At5g06770.1 68418.m00765 KH domain-containing protein / zinc fin... 28 3.9
At4g38040.1 68417.m05373 exostosin family protein contains Pfam ... 28 3.9
At3g18140.1 68416.m02306 transducin family protein / WD-40 repea... 28 3.9
At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identica... 28 3.9
At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein ... 28 3.9
At1g29560.1 68414.m03615 expressed protein ; expression supporte... 28 3.9
At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein ... 27 5.1
At1g19860.1 68414.m02491 zinc finger (CCCH-type) family protein ... 27 5.1
At5g04480.1 68418.m00447 expressed protein 27 6.8
At2g36200.1 68415.m04444 kinesin motor protein-related 27 6.8
At2g03560.1 68415.m00316 F-box family protein (FBX7) identical t... 27 6.8
At5g26290.1 68418.m03143 meprin and TRAF homology domain-contain... 27 9.0
At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein ... 27 9.0
At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein ... 27 9.0
At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein ... 27 9.0
At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein ... 27 9.0
At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related simil... 27 9.0
At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein ... 27 9.0
>At1g75340.1 68414.m08751 zinc finger (CCCH-type) family protein
weak similarity to Nucleoporin NUP42 (Nuclear pore
protein NUP42) (Swiss-Prot:P49686) [Saccharomyces
cerevisiae]; contains Pfam profile PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 38.7 bits (86), Expect = 0.002
Identities = 14/25 (56%), Positives = 19/25 (76%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVYGSK 156
+C+ FQ+G CRYG+NCRF H +K
Sbjct: 5 LCRNFQRGSCRYGENCRFLHPQQAK 29
>At5g16540.3 68418.m01936 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 354
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVY 258
+C F+ + G C++G +C+F+H +TY+ T P +++ H + + +++ + S
Sbjct: 273 LCVFYSRYGICKFGPSCKFDHPM-RVFTYNNNTASPSPSSSLHQETAITTELRNLLVSSS 331
Query: 259 TEA 267
EA
Sbjct: 332 VEA 334
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEHVYGSK 156
+ + G CR+G CRF H + K
Sbjct: 30 YIRTGLCRFGSTCRFNHPHDRK 51
>At5g16540.2 68418.m01935 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 368
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVY 258
+C F+ + G C++G +C+F+H +TY+ T P +++ H + + +++ + S
Sbjct: 287 LCVFYSRYGICKFGPSCKFDHPM-RVFTYNNNTASPSPSSSLHQETAITTELRNLLVSSS 345
Query: 259 TEA 267
EA
Sbjct: 346 VEA 348
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEHVYGSK 156
+ + G CR+G CRF H + K
Sbjct: 51 YIRTGLCRFGSTCRFNHPHDRK 72
>At5g16540.1 68418.m01934 zinc finger (CCCH-type) family protein
identical to zinc finger protein 3 [Arabidopsis
thaliana] gi|4689376|gb|AAD27875; contains Pfam domain,
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and similar)
Length = 375
Score = 36.3 bits (80), Expect = 0.011
Identities = 16/63 (25%), Positives = 35/63 (55%), Gaps = 1/63 (1%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVY 258
+C F+ + G C++G +C+F+H +TY+ T P +++ H + + +++ + S
Sbjct: 294 LCVFYSRYGICKFGPSCKFDHPM-RVFTYNNNTASPSPSSSLHQETAITTELRNLLVSSS 352
Query: 259 TEA 267
EA
Sbjct: 353 VEA 355
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/22 (40%), Positives = 13/22 (59%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEHVYGSK 156
+ + G CR+G CRF H + K
Sbjct: 51 YIRTGLCRFGSTCRFNHPHDRK 72
>At2g24830.1 68415.m02970 zinc finger (CCCH-type) family protein /
D111/G-patch domain-containing protein contains Pfam
profiles PF01585: G-patch domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 497
Score = 36.3 bits (80), Expect = 0.011
Identities = 12/22 (54%), Positives = 16/22 (72%)
Frame = +1
Query: 76 MIVCKFFQQGYCRYGQNCRFEH 141
M++CKFF Q CR+G +CR H
Sbjct: 139 MMICKFFMQQRCRFGSSCRSSH 160
>At2g05160.1 68415.m00543 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM)
Length = 536
Score = 35.9 bits (79), Expect = 0.015
Identities = 11/25 (44%), Positives = 19/25 (76%)
Frame = +1
Query: 67 YPIMIVCKFFQQGYCRYGQNCRFEH 141
+P+ I C +F +G+C++G NCR+ H
Sbjct: 157 FPVKI-CHYFNKGFCKHGNNCRYFH 180
>At5g63260.1 68418.m07940 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 435
Score = 34.7 bits (76), Expect = 0.034
Identities = 12/26 (46%), Positives = 20/26 (76%), Gaps = 1/26 (3%)
Frame = +1
Query: 70 PIMIVCKF-FQQGYCRYGQNCRFEHV 144
P ++ CK+ F+ G C+YG++CRF H+
Sbjct: 149 PKLMECKYYFRTGGCKYGESCRFSHM 174
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C F+ + G C+YG +C+F H
Sbjct: 107 CSFYMRTGSCKYGSSCKFNH 126
Score = 27.1 bits (57), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C F+ + G C++G +C+F H
Sbjct: 200 CPFYMRNGSCKFGSDCKFNH 219
>At3g51120.1 68416.m05598 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1230
Score = 34.3 bits (75), Expect = 0.045
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+CKF++ GYC+ G +C F H
Sbjct: 1210 ICKFYESGYCKRGASCSFWH 1229
>At3g08505.2 68416.m00987 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 34.3 bits (75), Expect = 0.045
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH 141
I+CKFF G C G+NC F H
Sbjct: 5 ILCKFFVHGSCLKGENCEFSH 25
Score = 34.3 bits (75), Expect = 0.045
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHV 144
VC F+Q+ C YG CR++HV
Sbjct: 34 VCTFYQKRICLYGSRCRYDHV 54
>At3g08505.1 68416.m00986 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains zinc finger
C-x8-C-x5-C-x3-H type (and similar) domains,
Pfam:PF00642 and zinc finger, C3HC4 type (RING finger)
domain, Pfam:PF00097
Length = 323
Score = 34.3 bits (75), Expect = 0.045
Identities = 12/21 (57%), Positives = 14/21 (66%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH 141
I+CKFF G C G+NC F H
Sbjct: 5 ILCKFFVHGSCLKGENCEFSH 25
Score = 34.3 bits (75), Expect = 0.045
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHV 144
VC F+Q+ C YG CR++HV
Sbjct: 34 VCTFYQKRICLYGSRCRYDHV 54
>At3g48440.1 68416.m05288 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 448
Score = 33.1 bits (72), Expect = 0.10
Identities = 12/23 (52%), Positives = 17/23 (73%), Gaps = 1/23 (4%)
Frame = +1
Query: 76 MIVCKF-FQQGYCRYGQNCRFEH 141
+I CK+ F+ G C+YG+ CRF H
Sbjct: 161 LIDCKYYFRTGGCKYGETCRFNH 183
Score = 29.1 bits (62), Expect = 1.7
Identities = 9/26 (34%), Positives = 16/26 (61%), Gaps = 1/26 (3%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEHVYGSKY 159
C F+ + G C++G +C+F H K+
Sbjct: 116 CSFYMRTGSCKFGSSCKFNHPLARKF 141
Score = 29.1 bits (62), Expect = 1.7
Identities = 14/53 (26%), Positives = 25/53 (47%), Gaps = 5/53 (9%)
Frame = +1
Query: 70 PIMIVCKFFQQ-GYCRYGQNCRFEH----VYGSKYTYHATTPQPVVTNTEHTD 213
P +C ++ + G C++G CRF+H Y ++ + P V N +D
Sbjct: 393 PDQNICTYYSRYGICKFGPACRFDHSVQPPYSTESSQAIVEPPQVSANGNESD 445
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/25 (36%), Positives = 15/25 (60%), Gaps = 1/25 (4%)
Frame = +1
Query: 70 PIMIVCKFFQQ-GYCRYGQNCRFEH 141
P + C ++ + G C+YG C+F H
Sbjct: 205 PGEVECPYYMRNGSCKYGAECKFNH 229
>At5g18550.1 68418.m02193 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 456
Score = 32.7 bits (71), Expect = 0.14
Identities = 13/38 (34%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 70 PIMIVCKFF-QQGYCRYGQNCRFEHVYGSKYTYHATTP 180
P + C F Q G C++G C+F+H GS ++ +P
Sbjct: 337 PGAVPCTHFAQHGICKFGPACKFDHSLGSSSLSYSPSP 374
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/20 (45%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C++F + G C++G +CRF H
Sbjct: 297 CQYFMRTGDCKFGTSCRFHH 316
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/20 (40%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C +F + G C++G CR+ H
Sbjct: 142 CSYFMRTGQCKFGSTCRYHH 161
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH 141
+ + G C YG CRF H
Sbjct: 51 YLRTGVCGYGSRCRFNH 67
>At2g47850.1 68415.m05972 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 468
Score = 32.7 bits (71), Expect = 0.14
Identities = 10/24 (41%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEHVYGS 153
C F+ Q G+C++G C+F+H G+
Sbjct: 341 CTFYVQNGFCKFGSTCKFDHPMGT 364
Score = 27.1 bits (57), Expect = 6.8
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C+F+ + G C++G +C+F H
Sbjct: 96 CQFYLKTGTCKFGASCKFHH 115
>At2g20280.1 68415.m02369 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 371
Score = 32.7 bits (71), Expect = 0.14
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 70 PIMIVCKFFQQGYCRYGQNCRFEH 141
P I+C+FF+ G C+ G C+F H
Sbjct: 89 PKSILCEFFKAGQCQKGFKCKFSH 112
>At3g51950.1 68416.m05698 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein contains
InterPro entry IPR000504: RNA-binding region RNP-1 (RNA
recognition motif) (RRM), PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 540
Score = 32.3 bits (70), Expect = 0.18
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEHVYG 150
+ C +F +G+C+ G +CRF H G
Sbjct: 152 VPCSYFARGFCKNGASCRFVHSDG 175
>At1g21570.1 68414.m02697 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 470
Score = 32.3 bits (70), Expect = 0.18
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +1
Query: 70 PIMIVCKFFQQGYCRYGQNCRFEHVY 147
PI +C F +GYC G CR +H Y
Sbjct: 323 PIAPICDGFLKGYCSEGDECRKKHSY 348
>At2g33835.1 68415.m04152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 587
Score = 31.9 bits (69), Expect = 0.24
Identities = 11/20 (55%), Positives = 15/20 (75%)
Frame = +1
Query: 85 CKFFQQGYCRYGQNCRFEHV 144
CKFF +G+C G +C+F HV
Sbjct: 102 CKFFAKGWCFNGVSCKFLHV 121
>At4g25440.1 68417.m03663 WD-40 repeat family protein / zfwd1
protein (ZFWD1) identical to zfwd1 protein (GI:12057164)
[Arabidopsis thaliana]
Length = 430
Score = 31.5 bits (68), Expect = 0.32
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVYGSKYTYHATT 177
+CKF+ G C YG CR+ H + ++ T
Sbjct: 107 LCKFWVDGNCPYGDKCRYLHCWSKGDSFSLLT 138
>At5g51980.1 68418.m06451 WD-40 repeat family protein / zfwd2
protein (ZFWD2), putative 99.8% identical to zfwd2
protein (GI:12057166) [Arabidopsis thaliana]; contains 6
copies (2 weak) Pfam PF00400: WD domain, G-beta repeat;
contains Pfam PF00642: Zinc finger C-x8-C-x5-C-x3-H type
(and similar) domain
Length = 437
Score = 31.1 bits (67), Expect = 0.42
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVYGSKYTYHATT 177
VC F+ G C YG CR+ H + ++ T
Sbjct: 114 VCNFWVDGNCTYGDKCRYLHCWSKGESFALLT 145
>At3g47120.1 68416.m05116 RNA recognition motif (RRM)-containing
protein contains InterPro entry IPR000504: RNA-binding
region RNP-1 (RNA recognition motif) (RRM)
Length = 352
Score = 31.1 bits (67), Expect = 0.42
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
VC+ FQ+G C G +C+F H
Sbjct: 135 VCRAFQRGECTRGDSCKFSH 154
Score = 31.1 bits (67), Expect = 0.42
Identities = 10/20 (50%), Positives = 14/20 (70%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
VC+ FQ+G C G +C+F H
Sbjct: 185 VCRAFQRGECTRGDSCKFSH 204
>At3g18640.1 68416.m02368 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 676
Score = 31.1 bits (67), Expect = 0.42
Identities = 13/23 (56%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +1
Query: 79 IVCKFFQQG--YCRYGQNCRFEH 141
I CKFF G +CR G+ CRF H
Sbjct: 218 IPCKFFAAGTGFCRNGKYCRFSH 240
>At5g06420.2 68418.m00719 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 30.7 bits (66), Expect = 0.55
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYG 150
+CK +++ GYC YG +C+F H G
Sbjct: 240 ICKDYKETGYCGYGDSCKFLHDRG 263
>At5g06420.1 68418.m00718 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein contains Pfam domains PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar) and
PF00097: Zinc finger, C3HC4 type (RING finger)
Length = 378
Score = 30.7 bits (66), Expect = 0.55
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYG 150
+CK +++ GYC YG +C+F H G
Sbjct: 240 ICKDYKETGYCGYGDSCKFLHDRG 263
>At3g06410.1 68416.m00739 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 437
Score = 30.7 bits (66), Expect = 0.55
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEHVYGSKYTY 165
F Q G C++G C+F+H S +Y
Sbjct: 337 FAQHGICKFGPACKFDHSMSSSLSY 361
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/20 (40%), Positives = 15/20 (75%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C++F + G C++G +CR+ H
Sbjct: 288 CQYFMRTGDCKFGSSCRYHH 307
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/17 (47%), Positives = 10/17 (58%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH 141
+ + G C YG CRF H
Sbjct: 38 YLRTGVCGYGSRCRFNH 54
>At2g32930.1 68415.m04037 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 453
Score = 30.7 bits (66), Expect = 0.55
Identities = 14/37 (37%), Positives = 22/37 (59%), Gaps = 1/37 (2%)
Frame = +1
Query: 34 PT*LHIIIE*NYPIMIVCKFFQQ-GYCRYGQNCRFEH 141
PT L+ I+ P C F+ G+C++G NC+F+H
Sbjct: 296 PTLLNPIVLPARPGQPACGNFKAYGFCKFGANCKFDH 332
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C+FF G C+YG +C++ H
Sbjct: 267 CRFFMNTGTCKYGDDCKYSH 286
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C+FF + G C YG +CR+ H
Sbjct: 50 CQFFLRTGQCGYGNSCRYNH 69
Score = 27.1 bits (57), Expect = 6.8
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C ++ Q G CR+G C+F H
Sbjct: 135 CPYYMQTGLCRFGVACKFHH 154
>At2g16470.1 68415.m01887 zinc finger (CCCH-type) family protein /
GYF domain-containing protein contains Pfam domains
PF00642: Zinc finger C-x8-C-x5-C-x3-H type (and
similar), PF02213: GYF domain
Length = 659
Score = 30.7 bits (66), Expect = 0.55
Identities = 12/27 (44%), Positives = 18/27 (66%), Gaps = 1/27 (3%)
Frame = +1
Query: 64 NYPIMIVCKFFQQ-GYCRYGQNCRFEH 141
N+ VCKFF++ G+CR G +C + H
Sbjct: 632 NFKGQRVCKFFRENGHCRKGASCNYLH 658
>At1g01350.1 68414.m00050 zinc finger (CCCH-type/C3HC4-type RING
finger) family protein similar to SP|O15541 Zinc finger
protein 183 {Homo sapiens}; contains Pfam profiles
PF04396: Protein of unknown function, DUF537, PF00097:
Zinc finger, C3HC4 type (RING finger), PF00642: Zinc
finger C-x8-C-x5-C-x3-H type (and similar)
Length = 586
Score = 30.7 bits (66), Expect = 0.55
Identities = 11/24 (45%), Positives = 17/24 (70%), Gaps = 1/24 (4%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYG 150
+CK +++ GYC YG +C+F H G
Sbjct: 205 ICKDYKETGYCGYGDSCKFLHDRG 228
>At5g49200.1 68418.m06089 WD-40 repeat family protein / zfwd4
protein (ZFWD4) contains 6 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd4 protein (GI:12057170)
[Arabidopsis thaliana]
Length = 419
Score = 30.3 bits (65), Expect = 0.73
Identities = 9/20 (45%), Positives = 15/20 (75%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
VCK+++ G C+ G+ C+F H
Sbjct: 94 VCKYWKDGKCKRGEQCQFLH 113
>At3g52980.1 68416.m05840 RNA recognition motif (RRM)-containing
protein predicted proteins, Arabidopsis thaliana
Length = 381
Score = 30.3 bits (65), Expect = 0.73
Identities = 9/21 (42%), Positives = 16/21 (76%)
Frame = +1
Query: 67 YPIMIVCKFFQQGYCRYGQNC 129
+P+ I C +F +G+C++G NC
Sbjct: 165 FPLKI-CHYFNKGFCKHGNNC 184
>At2g47680.1 68415.m05955 zinc finger (CCCH type) helicase family
protein similar to SP|Q28141 ATP-dependent RNA helicase
A (Nuclear DNA helicase II) (DEAD-box protein 9) {Bos
taurus}; contains Pfam profiles PF00271: Helicase
conserved C-terminal domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 1015
Score = 30.3 bits (65), Expect = 0.73
Identities = 13/34 (38%), Positives = 17/34 (50%), Gaps = 1/34 (2%)
Frame = +1
Query: 85 CKFFQQGY-CRYGQNCRFEHVYGSKYTYHATTPQ 183
CKFF CR G++C F H + T + PQ
Sbjct: 760 CKFFASSQGCRNGESCLFSHAMRRRTTSYLPPPQ 793
Score = 29.9 bits (64), Expect = 0.96
Identities = 11/24 (45%), Positives = 12/24 (50%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVYGS 153
VC +F GYC G C F H S
Sbjct: 732 VCVYFLNGYCNRGGQCTFTHTLQS 755
>At5g40880.1 68418.m04964 WD-40 repeat family protein / zfwd3
protein (ZFWD3) contains 5 WD-40 repeats (PF00400);
contains Zinc finger C-x8-C-x5-C-x3-H type domain
(PF00642); identical to zfwd3 protein (GP:12057168)
{Arabidopsis thaliana}
Length = 472
Score = 29.9 bits (64), Expect = 0.96
Identities = 10/24 (41%), Positives = 15/24 (62%)
Frame = +1
Query: 70 PIMIVCKFFQQGYCRYGQNCRFEH 141
P VC F++ G C+ G+ C+F H
Sbjct: 146 PKKSVCNFWKDGNCKKGEKCQFLH 169
>At1g04990.2 68414.m00500 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C+FF G C+YG +C++ H
Sbjct: 267 CRFFMNTGTCKYGDDCKYSH 286
Score = 29.5 bits (63), Expect = 1.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH 141
F G+C++G NC+F+H
Sbjct: 316 FRSYGFCKFGPNCKFDH 332
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C+F+ + G C YG +CR+ H
Sbjct: 53 CQFYLRTGLCGYGSSCRYNH 72
Score = 27.1 bits (57), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C++F + G C+YG C++ H
Sbjct: 96 CEYFLKTGACKYGPTCKYHH 115
>At1g04990.1 68414.m00499 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 404
Score = 29.5 bits (63), Expect = 1.3
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C+FF G C+YG +C++ H
Sbjct: 267 CRFFMNTGTCKYGDDCKYSH 286
Score = 29.5 bits (63), Expect = 1.3
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH 141
F G+C++G NC+F+H
Sbjct: 316 FRSYGFCKFGPNCKFDH 332
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/20 (45%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C+F+ + G C YG +CR+ H
Sbjct: 53 CQFYLRTGLCGYGSSCRYNH 72
Score = 27.1 bits (57), Expect = 6.8
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C++F + G C+YG C++ H
Sbjct: 96 CEYFLKTGACKYGPTCKYHH 115
>At5g12440.1 68418.m01462 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 552
Score = 29.1 bits (62), Expect = 1.7
Identities = 8/19 (42%), Positives = 14/19 (73%)
Frame = +1
Query: 85 CKFFQQGYCRYGQNCRFEH 141
C +F +G C+ G++C+F H
Sbjct: 135 CVYFSRGLCKNGESCKFIH 153
>At2g02160.1 68415.m00152 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 669
Score = 29.1 bits (62), Expect = 1.7
Identities = 25/87 (28%), Positives = 39/87 (44%), Gaps = 12/87 (13%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH-----VYGSKYTYH---ATTPQ----PVVTNTEHTDEQL 222
+ C FFQ+G C G C F H Y ++ AT PQ P+ NTE +++L
Sbjct: 118 VPCLFFQKGMCMKGDMCSFLHTPNPAAYKKQHPVEAKPATDPQCSKKPIENNTE--EKKL 175
Query: 223 VNQVQTDVKSVYTEANGYSRVMHPTMR 303
+ + V +T+ + RV +R
Sbjct: 176 PDVNLSKVVKGHTDISAAPRVASTGLR 202
>At1g29570.1 68414.m03616 zinc finger protein-related contains
similarity to zinc finger proteins (CCCH type)
Length = 321
Score = 29.1 bits (62), Expect = 1.7
Identities = 10/20 (50%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C+F+ + G CRY +CRF H
Sbjct: 61 CQFYLKNGLCRYRSSCRFNH 80
>At1g02070.1 68414.m00129 expressed protein
Length = 131
Score = 29.1 bits (62), Expect = 1.7
Identities = 16/47 (34%), Positives = 20/47 (42%)
Frame = +1
Query: 88 KFFQQGYCRYGQNCRFEHVYGSKYTYHATTPQPVVTNTEHTDEQLVN 228
K F G+CR CRF+H Y S Y P + D +L N
Sbjct: 16 KLFSCGHCR----CRFQHSYCSNYYGQFAEPTEICDWCRSDDRKLSN 58
>At3g12130.1 68416.m01509 KH domain-containing protein / zinc finger
(CCCH type) family protein
Length = 248
Score = 28.3 bits (60), Expect = 2.9
Identities = 8/20 (40%), Positives = 12/20 (60%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C+ F +G C +G C F H
Sbjct: 218 ICERFSKGNCTFGDRCHFAH 237
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/24 (41%), Positives = 12/24 (50%)
Frame = +1
Query: 88 KFFQQGYCRYGQNCRFEHVYGSKY 159
KFF C +G+NC F H Y
Sbjct: 44 KFFSTSGCPFGENCHFLHYVPGGY 67
>At3g02830.1 68416.m00275 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 397
Score = 28.3 bits (60), Expect = 2.9
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C ++ + G CR+G CRF H
Sbjct: 46 CSYYIRTGLCRFGSTCRFNH 65
Score = 28.3 bits (60), Expect = 2.9
Identities = 15/44 (34%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEHVYGSKYTYHAT---TPQPVVTNT 201
+C F+ + G C++G +C+F+H +TY T T + V T+T
Sbjct: 325 LCVFYTRYGICKFGPSCKFDHPM-RVFTYDNTASETDEVVETST 367
Score = 27.1 bits (57), Expect = 6.8
Identities = 7/17 (41%), Positives = 12/17 (70%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH 141
F + G+C++G C+F H
Sbjct: 140 FLRTGHCKFGGTCKFNH 156
>At2g35430.1 68415.m04342 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 252
Score = 28.3 bits (60), Expect = 2.9
Identities = 11/34 (32%), Positives = 17/34 (50%)
Frame = +1
Query: 64 NYPIMIVCKFFQQGYCRYGQNCRFEHVYGSKYTY 165
N+ I K+ GYC +G +C F H +T+
Sbjct: 143 NWKTRICNKWQTTGYCPFGSHCHFAHGPSELHTF 176
>At1g44900.1 68414.m05144 DNA replication licensing factor, putative
similar to DNA replication licensing factor MCM2 from
{Xenopus laevis} SP|P55861, SP|P49736 {Homo sapiens};
contains Pfam profile PF00493: MCM2/3/5 family
Length = 928
Score = 28.3 bits (60), Expect = 2.9
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +1
Query: 133 FEHVYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVYTE 264
F HV+ + + A PQPV+ E E+++ + + K+++T+
Sbjct: 255 FIHVHPNIAIWLADAPQPVLEVMEEVSEKVIFDLHPNYKNIHTK 298
>At5g31753.1 68418.m03770 hypothetical protein
Length = 169
Score = 27.9 bits (59), Expect = 3.9
Identities = 13/44 (29%), Positives = 22/44 (50%), Gaps = 1/44 (2%)
Frame = +1
Query: 142 VYGSKYTYHATTPQPVVTNTEHTDEQLVNQVQTDV-KSVYTEAN 270
+ + T+ PQP+ EH DE++ Q V + YT+A+
Sbjct: 117 IMSGRRTHERHAPQPIRLAIEHNDEEMAEPHQAPVMPAEYTQAD 160
>At5g06770.1 68418.m00765 KH domain-containing protein / zinc finger
(CCCH type) family protein contains Pfam domains
PF00013: KH domain and PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 240
Score = 27.9 bits (59), Expect = 3.9
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C + +G C YG C F H
Sbjct: 210 ICDRYSKGNCTYGDRCHFAH 229
Score = 26.6 bits (56), Expect = 9.0
Identities = 10/24 (41%), Positives = 11/24 (45%)
Frame = +1
Query: 88 KFFQQGYCRYGQNCRFEHVYGSKY 159
KFF C +G NC F H Y
Sbjct: 44 KFFSTSGCPFGDNCHFLHYVPGGY 67
>At4g38040.1 68417.m05373 exostosin family protein contains Pfam
profile: PF03016 Exostosin family
Length = 425
Score = 27.9 bits (59), Expect = 3.9
Identities = 16/50 (32%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Frame = +1
Query: 145 YGSKYTYHATTPQPVVTNTE-HTDEQLVNQVQTDVKSVYTEANGYSRVMH 291
Y S + + P PV+ T H VN+ +TD ++ E YS V H
Sbjct: 39 YLSLNSLRTSPPSPVIVVTPIHVPHTFVNEYKTDNETPTMEEETYSDVYH 88
>At3g18140.1 68416.m02306 transducin family protein / WD-40 repeat
family protein contains 6 WD-40 repeats (PF00400);
similar to Pop3 (GP:3434986) [Schizosaccharomyces pombe]
Length = 305
Score = 27.9 bits (59), Expect = 3.9
Identities = 11/35 (31%), Positives = 20/35 (57%)
Frame = +1
Query: 157 YTYHATTPQPVVTNTEHTDEQLVNQVQTDVKSVYT 261
+ ++ +PQPV+T HT+ + Q D K +Y+
Sbjct: 61 FDVNSNSPQPVMTYDSHTNNVMAVGFQCDAKWMYS 95
>At3g12680.1 68416.m01582 floral homeotic protein (HUA1) identical
to floral homeotic protein HUA1 [Arabidopsis thaliana]
gi|16797661|gb|AAK01470
Length = 524
Score = 27.9 bits (59), Expect = 3.9
Identities = 12/42 (28%), Positives = 23/42 (54%), Gaps = 1/42 (2%)
Frame = +1
Query: 91 FFQQGYCRYGQNCRFEH-VYGSKYTYHATTPQPVVTNTEHTD 213
+ Q C++G++CRF+H ++ + PVV N E+ +
Sbjct: 183 YMQTRTCKFGESCRFDHPIWVPEGGIPDWKEAPVVPNEEYPE 224
Score = 27.5 bits (58), Expect = 5.1
Identities = 9/20 (45%), Positives = 13/20 (65%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFF-QQGYCRYGQNCRFEH 141
C F+ + G C+YG CR+ H
Sbjct: 346 CPFYLKTGSCKYGATCRYNH 365
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/20 (40%), Positives = 14/20 (70%), Gaps = 1/20 (5%)
Frame = +1
Query: 85 CKFFQQ-GYCRYGQNCRFEH 141
C ++ + G C+YG C+F+H
Sbjct: 479 CPYYMKTGTCKYGATCKFDH 498
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/21 (38%), Positives = 15/21 (71%), Gaps = 1/21 (4%)
Frame = +1
Query: 82 VCKFFQQ-GYCRYGQNCRFEH 141
+C F+ + G C++G +C+F H
Sbjct: 273 MCTFYMKTGKCKFGLSCKFHH 293
>At2g25900.1 68415.m03108 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 315
Score = 27.9 bits (59), Expect = 3.9
Identities = 9/19 (47%), Positives = 12/19 (63%)
Frame = +1
Query: 85 CKFFQQGYCRYGQNCRFEH 141
C F++G CR G +C F H
Sbjct: 136 CPEFRKGSCRRGDSCEFSH 154
>At1g29560.1 68414.m03615 expressed protein ; expression supported
by MPSS
Length = 521
Score = 27.9 bits (59), Expect = 3.9
Identities = 8/17 (47%), Positives = 12/17 (70%)
Frame = +1
Query: 94 FQQGYCRYGQNCRFEHV 144
F GYC++G C F+H+
Sbjct: 207 FAGGYCKFGSVCGFQHI 223
>At5g07060.1 68418.m00799 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 363
Score = 27.5 bits (58), Expect = 5.1
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C F+ G C+ G C F H
Sbjct: 159 ICSFYTIGQCKRGAECSFRH 178
>At1g19860.1 68414.m02491 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 413
Score = 27.5 bits (58), Expect = 5.1
Identities = 10/24 (41%), Positives = 14/24 (58%), Gaps = 1/24 (4%)
Frame = +1
Query: 73 IMIVCKFFQQGY-CRYGQNCRFEH 141
IM C +F CR+G NC ++H
Sbjct: 359 IMKACMYFNSARGCRHGANCMYQH 382
>At5g04480.1 68418.m00447 expressed protein
Length = 1050
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/35 (34%), Positives = 14/35 (40%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEHVYGSKYTYHATTPQP 186
+C QG CR F H+YG A P P
Sbjct: 833 MCDILNQGNCRTTFEDAFRHMYGLPEHIEALPPMP 867
>At2g36200.1 68415.m04444 kinesin motor protein-related
Length = 1056
Score = 27.1 bits (57), Expect = 6.8
Identities = 12/41 (29%), Positives = 24/41 (58%), Gaps = 1/41 (2%)
Frame = +3
Query: 324 HDLSPEEMRLFIYESKRNNT-LEQAIAYINNLTRETRQKYE 443
H+L + F N T L++ ++ +NNLT++ ++K+E
Sbjct: 752 HELVDSRLHNFKDAVSSNKTFLDEHVSAVNNLTKDAKRKWE 792
>At2g03560.1 68415.m00316 F-box family protein (FBX7) identical to
F-box protein family, AtFBX7 (GI:20197899) [Arabidopsis
thaliana]; contains F-box domain PF:00646
Length = 425
Score = 27.1 bits (57), Expect = 6.8
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +3
Query: 282 CYAPYNEKPIIPGIHDLSPEEMRLFIYESK 371
C+ Y+ +P G+ DL+ EEM +YE++
Sbjct: 354 CFVEYDRQPF-SGVFDLATEEMGRKLYENQ 382
>At5g26290.1 68418.m03143 meprin and TRAF homology domain-containing
protein / MATH domain-containing protein low similarity
to ubiquitin-specific protease 12 [Arabidopsis thaliana]
GI:11993471; contains Pfam profile PF00917: MATH domain
Length = 333
Score = 26.6 bits (56), Expect = 9.0
Identities = 15/50 (30%), Positives = 26/50 (52%)
Frame = +3
Query: 276 LSCYAPYNEKPIIPGIHDLSPEEMRLFIYESKRNNTLEQAIAYINNLTRE 425
+S YA E +P +++ + ++LF+Y K N L + NN T+E
Sbjct: 102 VSLYAKIVETESLPVGWEVNVD-LKLFVYNGKLNKYLIVTVKRYNNATKE 150
>At5g07500.1 68418.m00858 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 245
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/21 (38%), Positives = 11/21 (52%)
Frame = +1
Query: 79 IVCKFFQQGYCRYGQNCRFEH 141
+ C F+ G C G +C F H
Sbjct: 96 VACPAFRNGACHRGDSCEFAH 116
>At2g29580.1 68415.m03592 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}; contains Pfam profile:
PF00076 RNA recognition motif (aka RRM, RBD, or RNP
domain)
Length = 483
Score = 26.6 bits (56), Expect = 9.0
Identities = 8/20 (40%), Positives = 11/20 (55%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
+C FF +G C G C + H
Sbjct: 162 ICSFFIRGECTRGDECPYRH 181
>At1g66810.1 68414.m07594 zinc finger (CCCH-type) family protein
contains Pfam domain, PF00642: Zinc finger
C-x8-C-x5-C-x3-H type (and similar)
Length = 310
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 88 KFFQQGYCRYGQNCRFEH 141
K+ + G C YG NC+F H
Sbjct: 240 KWQETGACCYGDNCQFAH 257
>At1g30460.1 68414.m03723 zinc finger (CCCH-type) family protein /
YT521-B-like family protein low similarity to cleavage
and polyadenylation specificity factor 30 kDa subunit
[Bos taurus] GI:2327052; contains Pfam profiles PF00642:
Zinc finger C-x8-C-x5-C-x3-H type (and similar),
PF04146: YT521-B-like family; supporting cDNA
gi|24415581|gb|AY140901.1|
Length = 678
Score = 26.6 bits (56), Expect = 9.0
Identities = 7/19 (36%), Positives = 12/19 (63%)
Frame = +1
Query: 85 CKFFQQGYCRYGQNCRFEH 141
C ++ G+C G +CR+ H
Sbjct: 120 CNMYKLGFCPNGPDCRYRH 138
>At1g10320.1 68414.m01162 U2 snRNP auxiliary factor-related similar
to U2 small nuclear ribonucleoprotein auxiliary factor
35 kD subunit related protein 1 (sp|Q15695)
Length = 757
Score = 26.6 bits (56), Expect = 9.0
Identities = 11/25 (44%), Positives = 14/25 (56%), Gaps = 1/25 (4%)
Frame = +1
Query: 85 CKF-FQQGYCRYGQNCRFEHVYGSK 156
C F + G CR+GQ C H Y +K
Sbjct: 246 CPFHLKTGACRFGQRCSRVHFYPNK 270
>At1g07360.1 68414.m00785 zinc finger (CCCH-type) family protein /
RNA recognition motif (RRM)-containing protein similar
to SP|O59800 Cell cycle control protein cwf5
{Schizosaccharomyces pombe}, RNA Binding Protein 47
[Nicotiana plumbaginifolia] GI:9663769; contains Pfam
profile: PF00076 RNA recognition motif (aka RRM, RBD, or
RNP domain)
Length = 481
Score = 26.6 bits (56), Expect = 9.0
Identities = 9/20 (45%), Positives = 11/20 (55%)
Frame = +1
Query: 82 VCKFFQQGYCRYGQNCRFEH 141
VC FF +G C G C + H
Sbjct: 162 VCSFFIRGECTRGAECPYRH 181
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,710,146
Number of Sequences: 28952
Number of extensions: 185718
Number of successful extensions: 538
Number of sequences better than 10.0: 60
Number of HSP's better than 10.0 without gapping: 460
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 538
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 848837888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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