Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1402
         (755 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.      23   3.5  
AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory recept...    22   4.6  
AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory recept...    22   6.1  

>DQ493452-1|ABF48588.1|  305|Tribolium castaneum hedgehog protein.
          Length = 305

 Score = 22.6 bits (46), Expect = 3.5
 Identities = 10/25 (40%), Positives = 16/25 (64%), Gaps = 2/25 (8%)
 Frame = +1

Query: 652 FLHYRPSENSEFVH--NVTGRILSL 720
           FL Y PS+  +F+H    +GR L++
Sbjct: 154 FLDYNPSQKRQFLHITLASGRTLTV 178


>AM292367-1|CAL23179.2| 1451|Tribolium castaneum gustatory receptor
           candidate 46 protein.
          Length = 1451

 Score = 22.2 bits (45), Expect = 4.6
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = -2

Query: 466 FVNVDGILENLELKSHNNILQMICSLH 386
           ++ ++G L  +E K+ +  L  IC+LH
Sbjct: 832 YIILNGRLIKMETKAQSVALGKICTLH 858


>AM292356-1|CAL23168.2|  251|Tribolium castaneum gustatory receptor
           candidate 35 protein.
          Length = 251

 Score = 21.8 bits (44), Expect = 6.1
 Identities = 6/16 (37%), Positives = 12/16 (75%), Gaps = 1/16 (6%)
 Frame = -1

Query: 638 WTLMVWIGIIS-VYSC 594
           W  ++W+GI+S ++ C
Sbjct: 157 WLFILWVGILSTIFLC 172


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 187,840
Number of Sequences: 336
Number of extensions: 4383
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20234955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)