Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1402
(755 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi... 41 2e-04
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe... 30 0.31
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu... 29 0.95
SPAC6G10.08 |idp1||isocitrate dehydrogenase Idp1|Schizosaccharom... 27 3.8
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr... 26 5.0
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo... 26 6.7
SPBC1685.08 |||histone deacetylase complex subunit Cti6|Schizosa... 26 6.7
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M... 25 8.8
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni... 25 8.8
>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
Hat1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 378
Score = 40.7 bits (91), Expect = 2e-04
Identities = 20/83 (24%), Positives = 44/83 (53%)
Frame = +2
Query: 5 VVDGNDVLEFKLVRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQT 184
V + N+ +E + V++ ++ + P + +FG+ E I+GY DL++ + Y +
Sbjct: 8 VHNANECIE---IVQVNEKHEKDCQYHPSNTYAIFGDAEVIYGYKDLNVTITYECPLMVP 64
Query: 185 YLGIDYTDKIEPSKSEGMKADDV 253
L I Y++++ P G++ D+
Sbjct: 65 KLEISYSERLAP--DSGVEPTDI 85
Score = 26.2 bits (55), Expect = 5.0
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = +3
Query: 633 RPRISQVLTLPPFRKLGICAQCY 701
R RISQ + LPPF+ G +Q Y
Sbjct: 197 RARISQFVILPPFQHQGHGSQLY 219
>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 30.3 bits (65), Expect = 0.31
Identities = 15/53 (28%), Positives = 27/53 (50%)
Frame = +2
Query: 593 CNCIQILCLSKPSTSTNLTSSYITALQKTRNLCTMLQAVYSHFIIIPEVIDLT 751
C + LC+ K S LT I + + +L + QAVY+ +++P + L+
Sbjct: 179 CAEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENVWQAVYTAGVLLPSPVSLS 231
>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 411
Score = 28.7 bits (61), Expect = 0.95
Identities = 18/59 (30%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
Frame = +2
Query: 584 SCLC--NCIQILCLSKPSTSTNLTS-SYITALQKTRNLCTMLQAVYSHFIIIPEVIDLT 751
+C C NC + CL+ P+ +T L + ++I+AL+K T L + H + +LT
Sbjct: 327 ACQCGDNCECLGCLTHPNNATTLAALNHISALEKETISHTDLHHTFKHEVNSSNNYELT 385
>SPAC6G10.08 |idp1||isocitrate dehydrogenase
Idp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 418
Score = 26.6 bits (56), Expect = 3.8
Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
Frame = +1
Query: 322 KKDESFTPHGK--MLHAFNVTPFDGESRSFEVYYCETSTQGF 441
K + SFTP G +NV F+G + +Y + S +GF
Sbjct: 161 KLELSFTPKGNPSAKETYNVYEFNGSGVAMSMYNTDDSIRGF 202
>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 585
Score = 26.2 bits (55), Expect = 5.0
Identities = 18/65 (27%), Positives = 28/65 (43%)
Frame = +1
Query: 505 DVMMISGHSSQFLRNIKRVKAVFDTLQLPMQLYTDIMPIQTINVHESHKFLHYRPSENSE 684
DV+ + +SQ N+K V FD + +P + + P TI FL + E
Sbjct: 94 DVLDVKAAASQQEDNMKIVLPSFDAIDVPKAYHPSLRPYFTILPLIPSDFLEHYIEGYFE 153
Query: 685 FVHNV 699
+ H V
Sbjct: 154 WFHPV 158
>SPCC594.04c |||steroid oxidoreductase superfamily
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 338
Score = 25.8 bits (54), Expect = 6.7
Identities = 14/41 (34%), Positives = 22/41 (53%)
Frame = -1
Query: 641 SWTLMVWIGIISVYSCIGSCSVSNTAFTRLIFLKNCEECPL 519
+WT+ W+G++ V+ GS TRL +CE+ PL
Sbjct: 276 NWTIFAWLGLVGVFQ--GS--------TRLTEKMSCEKYPL 306
>SPBC1685.08 |||histone deacetylase complex subunit
Cti6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 424
Score = 25.8 bits (54), Expect = 6.7
Identities = 13/30 (43%), Positives = 15/30 (50%)
Frame = +1
Query: 370 NVTPFDGESRSFEVYYCETSTQGFLEYHQR 459
N F ES EVYYCE F + +QR
Sbjct: 81 NCVGFADESEVPEVYYCEICHPEFHKVYQR 110
>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 274
Score = 25.4 bits (53), Expect = 8.8
Identities = 12/35 (34%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -1
Query: 617 GIISVYSCIGSCSVSNTAFT-RLIFLKNCEECPLI 516
GI+S+Y C SC ++N L +L+ E +I
Sbjct: 237 GILSIYVCSASCDLANCGLAEELCWLQTFSEQGII 271
>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
Rad15|Schizosaccharomyces pombe|chr 1|||Manual
Length = 772
Score = 25.4 bits (53), Expect = 8.8
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Frame = +1
Query: 268 KVIAPGYITNLDHFVSQLKK-DESFTPHGKMLHAFNVTP 381
K PG I +HF++ LK+ E K+LH TP
Sbjct: 315 KEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETP 353
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,248,361
Number of Sequences: 5004
Number of extensions: 70762
Number of successful extensions: 218
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 361294920
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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