Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1402
         (755 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709...    36   0.026
12_02_0919 - 24307648-24307770,24308271-24308326,24308429-24308906     28   9.2  
04_04_0765 - 27910189-27912393,27912521-27912598                       28   9.2  

>09_02_0578 +
           10869627-10869702,10870489-10870555,10870813-10870963,
           10871043-10871111,10871992-10872030,10872113-10872186,
           10872281-10872347,10872902-10873075,10873169-10873852
          Length = 466

 Score = 36.3 bits (80), Expect = 0.026
 Identities = 21/68 (30%), Positives = 33/68 (48%), Gaps = 1/68 (1%)
 Frame = +2

Query: 26  LEFKLVRSVDDLEN-EETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDY 202
           L F   R+ D+  +   TS  P   +  FGE+  I+GY +L I ++ SA S   Y  I +
Sbjct: 57  LVFDTARNPDEAGSANSTSLQPFDLNHFFGEDGKIYGYKNLKINVWISAISFHAYADISF 116

Query: 203 TDKIEPSK 226
            +  +  K
Sbjct: 117 EETSDGGK 124


>12_02_0919 - 24307648-24307770,24308271-24308326,24308429-24308906
          Length = 218

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 17/48 (35%), Positives = 23/48 (47%), Gaps = 2/48 (4%)
 Frame = +1

Query: 451 HQRLQTFLLWYVDAASFIDVMMIS--GHSSQFLRNIKRVKAVFDTLQL 588
           HQ L+ F  W +   SFI  + I   G S+  L N +  K   D L+L
Sbjct: 126 HQHLRHFSCWSLALLSFISSLSIEGVGTSNLLLANCRHPKTAEDFLKL 173


>04_04_0765 - 27910189-27912393,27912521-27912598
          Length = 760

 Score = 27.9 bits (59), Expect = 9.2
 Identities = 11/24 (45%), Positives = 15/24 (62%)
 Frame = +2

Query: 566 QCSIRYSCLCNCIQILCLSKPSTS 637
           QC +RY  L +   ++CLS PS S
Sbjct: 58  QCLLRYRVLLHVRSVVCLSAPSAS 81


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,725,239
Number of Sequences: 37544
Number of extensions: 403271
Number of successful extensions: 858
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 839
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2016060588
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)