Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1402
         (755 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    68   7e-12
SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)                      30   2.3  
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)           29   4.1  
SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   9.4  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 68.1 bits (159), Expect = 7e-12
 Identities = 31/71 (43%), Positives = 44/71 (61%)
 Frame = +2

Query: 41  VRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQTYLGIDYTDKIEP 220
           V S  D+ ++   F P   HQ FG++E IFGY  L ++LYY AG+L TYLG+ Y   I  
Sbjct: 38  VTSEKDVFDKGRQFHPAFSHQFFGDSETIFGYCGLEVQLYYHAGTLLTYLGLTYESNING 97

Query: 221 SKSEGMKADDV 253
             ++G++AD V
Sbjct: 98  KVADGIEADPV 108



 Score = 35.9 bits (79), Expect = 0.036
 Identities = 11/29 (37%), Positives = 22/29 (75%)
 Frame = +1

Query: 283 GYITNLDHFVSQLKKDESFTPHGKMLHAF 369
           G++TN D F+++L +  SF P G+++H++
Sbjct: 119 GFLTNKDEFIAKLPEQSSFVPMGELIHSY 147


>SB_47303| Best HMM Match : CPSF_A (HMM E-Value=0)
          Length = 1291

 Score = 29.9 bits (64), Expect = 2.3
 Identities = 16/45 (35%), Positives = 25/45 (55%)
 Frame = -1

Query: 617 GIISVYSCIGSCSVSNTAFTRLIFLKNCEECPLIIITSMNDAAST 483
           G++ +YS  G        FTR+ F+KN  + P +I+ S +  AST
Sbjct: 398 GVMEIYSLPG--------FTRVFFVKNFSKAPRVIVDSGDSGAST 434


>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
          Length = 2146

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 16/58 (27%), Positives = 33/58 (56%), Gaps = 2/58 (3%)
 Frame = +1

Query: 427 STQGF--LEYHQRLQTFLLWYVDAASFIDVMMISGHSSQFLRNIKRVKAVFDTLQLPM 594
           +TQG+  L+  + ++T+LL Y+D   + ++   +G   Q +RN  R +   + L +P+
Sbjct: 73  ATQGYGGLDVEEWVETYLLMYLDGDKYNEIKRSAG---QLVRNTDRNRVRLNYLPIPV 127


>SB_46817| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 470

 Score = 27.9 bits (59), Expect = 9.4
 Identities = 9/24 (37%), Positives = 16/24 (66%)
 Frame = -2

Query: 697 HCAQIPSFLKGGNVRTCEIRGR*W 626
           H  + P+++KGG +R  ++RG  W
Sbjct: 40  HFEESPNYIKGGEMRDYQVRGLNW 63


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,729,861
Number of Sequences: 59808
Number of extensions: 506213
Number of successful extensions: 1082
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1082
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2058295707
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)