Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1402
         (755 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical pr...    58   7e-09
U00065-2|AAL27237.1|  672|Caenorhabditis elegans Prion-like-(q/n...    30   2.0  
U41105-10|AAA82404.1|  238|Caenorhabditis elegans Hypothetical p...    29   4.7  
AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical...    29   4.7  
AC006617-10|AAF39773.1|  195|Caenorhabditis elegans Hypothetical...    29   4.7  
AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical ...    28   6.2  
Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical p...    28   8.2  
AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical ...    28   8.2  
AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear recep...    28   8.2  
AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical ...    28   8.2  

>Z49128-4|CAA88954.1|  541|Caenorhabditis elegans Hypothetical
           protein M03C11.4 protein.
          Length = 541

 Score = 58.0 bits (134), Expect = 7e-09
 Identities = 25/83 (30%), Positives = 51/83 (61%)
 Frame = +2

Query: 5   VVDGNDVLEFKLVRSVDDLENEETSFGPDMCHQVFGENENIFGYTDLHIKLYYSAGSLQT 184
           + DG  V++   ++++ ++      + P+M +Q FG+ E IFGY DL + ++++A +L +
Sbjct: 146 ISDGLAVVKMTFLKNMQEISTAPR-YEPEMVYQHFGDEETIFGYEDLEVTIHHTAQTLYS 204

Query: 185 YLGIDYTDKIEPSKSEGMKADDV 253
           Y+ + Y+ K +     G++ADDV
Sbjct: 205 YINVSYSSKAK--NENGLEADDV 225



 Score = 42.7 bits (96), Expect = 3e-04
 Identities = 20/73 (27%), Positives = 40/73 (54%)
 Frame = +1

Query: 289 ITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSFEVYYCETSTQGFLEYHQRLQT 468
           ++  + F  +L K + F P G+M+H F +     + +S+EVY     T+ F  + +R+QT
Sbjct: 240 VSGKEEFQQKLIKQKDFKPFGEMVHKFEL-----KGKSYEVYKVAEQTEEFNLFLERIQT 294

Query: 469 FLLWYVDAASFID 507
             +++++  S  D
Sbjct: 295 LGMFFIECCSLTD 307



 Score = 35.9 bits (79), Expect = 0.031
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 2/70 (2%)
 Frame = +3

Query: 489 CSIIHRCDDDQWTFFTVFEKYQTSEG--SXXXXXXXXXXXXXXXXXPNHQRPRISQVLTL 662
           CS+    +D+ W  + ++E+  T EG  S                  +  RPRI+Q+L L
Sbjct: 303 CSLTDNTEDN-WLHYFIYERCDTGEGDGSTVANVAGYATLFKFYNYIDRIRPRIAQMLLL 361

Query: 663 PPFRKLGICA 692
           P +RK GI A
Sbjct: 362 PQYRKSGIGA 371


>U00065-2|AAL27237.1|  672|Caenorhabditis elegans
           Prion-like-(q/n-rich)-domain-bearingprotein protein 25
           protein.
          Length = 672

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 18/50 (36%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
 Frame = +2

Query: 566 QCSIRYSCLCN--CIQILCLSKPSTSTNLTSSYITALQKTRNLCTMLQAV 709
           QC I   CL N  C+   C   PS +TN+ +++ T    + NLC+  Q V
Sbjct: 583 QCQITQQCLGNSQCMNSFC-QCPSGTTNV-NNFCTTSSSSSNLCSAGQTV 630


>U41105-10|AAA82404.1|  238|Caenorhabditis elegans Hypothetical
           protein T02G5.3 protein.
          Length = 238

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 8/26 (30%), Positives = 17/26 (65%)
 Frame = +3

Query: 102 RYLERMRIYLDIQIYTLNYITVQEVF 179
           +Y  R+R+YL   ++ LN+  + ++F
Sbjct: 192 KYQNRLRLYLGFCVFALNFFVIDQIF 217


>AF016684-15|AAB66214.1|  543|Caenorhabditis elegans Hypothetical
           protein F45C12.15 protein.
          Length = 543

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 448 ILENLELKSHNNILQMICSLHQKGLH*MHAAF 353
           ++ENLE   H + +++    HQK  H  HA F
Sbjct: 338 LVENLETICHRDNIRLFTDFHQKRKHPSHADF 369


>AC006617-10|AAF39773.1|  195|Caenorhabditis elegans Hypothetical
           protein C39B5.10 protein.
          Length = 195

 Score = 28.7 bits (61), Expect = 4.7
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 631 NVHESHKFLHYRPSENSEFVHNVTG 705
           N HE+ K +H+ PSEN E    + G
Sbjct: 105 NWHETDKTIHFHPSENVEAAFPIAG 129


>AC024880-9|AAK85515.1|  446|Caenorhabditis elegans Hypothetical
           protein Y97E10AR.6 protein.
          Length = 446

 Score = 28.3 bits (60), Expect = 6.2
 Identities = 16/50 (32%), Positives = 21/50 (42%)
 Frame = +1

Query: 511 MMISGHSSQFLRNIKRVKAVFDTLQLPMQLYTDIMPIQTINVHESHKFLH 660
           M IS  S  F  +  RV +VF  +         I P    ++  SH FLH
Sbjct: 1   MTISFSSLPFSASFSRVFSVFSPISAFFCFCFSIFPFSVPDIFSSHSFLH 50


>Z82259-10|CAD36480.1|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 300 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 392
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AL022473-2|CAA18549.2|  439|Caenorhabditis elegans Hypothetical
           protein H27C11.1a protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 300 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 392
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AF332211-1|AAK17982.1|  439|Caenorhabditis elegans nuclear receptor
           NHR-97 protein.
          Length = 439

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = +3

Query: 300 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 392
           G+LCV   +R   H  +  AAC  C  F WR
Sbjct: 32  GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62


>AC006791-5|AAF60739.1|  330|Caenorhabditis elegans Hypothetical
           protein Y4C6A.3 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 136 ISKYILILSKYLVTHVGTKACLFI-FEIIYRPH*FEF 29
           IS Y LIL    +TH+G   C++I   I++  + F F
Sbjct: 103 ISMYPLILMFLPITHIGVPVCIYIALHIVFALYYFLF 139


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,962,420
Number of Sequences: 27780
Number of extensions: 397288
Number of successful extensions: 1008
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 975
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1007
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1798543458
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)