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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1402
         (755 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At2g14330.1 68415.m01602 hypothetical protein siimilar to At3g45...    30   1.9  
At5g03580.1 68418.m00316 polyadenylate-binding protein, putative...    29   2.5  
At5g01090.1 68418.m00013 legume lectin family protein contains P...    29   4.4  
At1g25375.1 68414.m03149 metallo-beta-lactamase family protein         29   4.4  
At5g03500.1 68418.m00306 transcriptional co-activator-related lo...    28   5.8  
At1g71720.1 68414.m08290 S1 RNA-binding domain-containing protei...    28   5.8  
At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ...    28   7.7  

>At2g14330.1 68415.m01602 hypothetical protein siimilar to
           At3g45350, At4g09400
          Length = 237

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 19/62 (30%), Positives = 28/62 (45%)
 Frame = +1

Query: 406 EVYYCETSTQGFLEYHQRLQTFLLWYVDAASFIDVMMISGHSSQFLRNIKRVKAVFDTLQ 585
           EV YCE   Q  L++    Q+     + A   +    +SGHS   L +   V  VF  L+
Sbjct: 169 EVLYCEAHNQQALDFQAHFQSLCSPAIVAV--LVCWRVSGHSKPKLVSHGPVSKVFGNLE 226

Query: 586 LP 591
           +P
Sbjct: 227 IP 228


>At5g03580.1 68418.m00316 polyadenylate-binding protein, putative /
           PABP, putative similar to poly(A)-binding protein
           [Triticum aestivum] GI:1737492; contains InterPro entry
           IPR000504: RNA-binding region RNP-1 (RNA recognition
           motif) (RRM)
          Length = 101

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 16/40 (40%), Positives = 21/40 (52%)
 Frame = +1

Query: 286 YITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSF 405
           YI NLD  VS+      F+  GK++ +     F GESR F
Sbjct: 20  YIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGF 59


>At5g01090.1 68418.m00013 legume lectin family protein contains Pfam
           domain, PF00139: Legume lectins beta domain
          Length = 353

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/29 (48%), Positives = 19/29 (65%)
 Frame = -3

Query: 273 NFSQSTPTSSAFIPSDLLGSILSV*SIPR 187
           NFS S  TS +F  SD +GS+L+   +PR
Sbjct: 88  NFSGSFSTSFSFSMSDEIGSVLAFIMVPR 116


>At1g25375.1 68414.m03149 metallo-beta-lactamase family protein
          Length = 524

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/32 (50%), Positives = 20/32 (62%)
 Frame = +2

Query: 2   LVVDGNDVLEFKLVRSVDDLENEETSFGPDMC 97
           L +D +DV E++ VRSV     EE  FGPD C
Sbjct: 92  LGIDISDVGEWRFVRSV-----EEPEFGPDSC 118


>At5g03500.1 68418.m00306 transcriptional co-activator-related low
           similarity to transcriptional co-activator CRSP33 [Homo
           sapiens] GI:4220890
          Length = 443

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 15/45 (33%), Positives = 23/45 (51%)
 Frame = +1

Query: 253 WGALTKVIAPGYITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFD 387
           W  L+K  APGY T L  +  +L  ++ F   GK+ H +    F+
Sbjct: 205 WCKLSK--APGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFE 247


>At1g71720.1 68414.m08290 S1 RNA-binding domain-containing protein
           contains Pfam domain, PF00575: S1 RNA binding domain
          Length = 487

 Score = 28.3 bits (60), Expect = 5.8
 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +1

Query: 262 LTKVIAPGYITNLDHFVSQLKKD-ESFTPHGKM 357
           LTK I P Y   LD+ +  LK D E F  +GKM
Sbjct: 186 LTKEILPLYDKELDYLLCDLKYDAEEFLVNGKM 218


>At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing
           protein contains INTERPRO:IPR000504 RNA-binding region
           RNP-1 (RNA recognition motif) domain
          Length = 259

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%)
 Frame = -1

Query: 545 LKNCEEC----PLIIITSMNDAASTYHRR 471
           LK+C+ C    P +++ +M+DA   YH+R
Sbjct: 205 LKHCQRCRNYRPWLVLKAMSDACFEYHQR 233


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,555,481
Number of Sequences: 28952
Number of extensions: 353195
Number of successful extensions: 762
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 745
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 762
length of database: 12,070,560
effective HSP length: 79
effective length of database: 9,783,352
effective search space used: 1682736544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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