BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1402 (755 letters) Database: arabidopsis 28,952 sequences; 12,070,560 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value At2g14330.1 68415.m01602 hypothetical protein siimilar to At3g45... 30 1.9 At5g03580.1 68418.m00316 polyadenylate-binding protein, putative... 29 2.5 At5g01090.1 68418.m00013 legume lectin family protein contains P... 29 4.4 At1g25375.1 68414.m03149 metallo-beta-lactamase family protein 29 4.4 At5g03500.1 68418.m00306 transcriptional co-activator-related lo... 28 5.8 At1g71720.1 68414.m08290 S1 RNA-binding domain-containing protei... 28 5.8 At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing ... 28 7.7 >At2g14330.1 68415.m01602 hypothetical protein siimilar to At3g45350, At4g09400 Length = 237 Score = 29.9 bits (64), Expect = 1.9 Identities = 19/62 (30%), Positives = 28/62 (45%) Frame = +1 Query: 406 EVYYCETSTQGFLEYHQRLQTFLLWYVDAASFIDVMMISGHSSQFLRNIKRVKAVFDTLQ 585 EV YCE Q L++ Q+ + A + +SGHS L + V VF L+ Sbjct: 169 EVLYCEAHNQQALDFQAHFQSLCSPAIVAV--LVCWRVSGHSKPKLVSHGPVSKVFGNLE 226 Query: 586 LP 591 +P Sbjct: 227 IP 228 >At5g03580.1 68418.m00316 polyadenylate-binding protein, putative / PABP, putative similar to poly(A)-binding protein [Triticum aestivum] GI:1737492; contains InterPro entry IPR000504: RNA-binding region RNP-1 (RNA recognition motif) (RRM) Length = 101 Score = 29.5 bits (63), Expect = 2.5 Identities = 16/40 (40%), Positives = 21/40 (52%) Frame = +1 Query: 286 YITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFDGESRSF 405 YI NLD VS+ F+ GK++ + F GESR F Sbjct: 20 YIANLDAQVSEEMLFLMFSDFGKVIRSVLAKDFRGESRGF 59 >At5g01090.1 68418.m00013 legume lectin family protein contains Pfam domain, PF00139: Legume lectins beta domain Length = 353 Score = 28.7 bits (61), Expect = 4.4 Identities = 14/29 (48%), Positives = 19/29 (65%) Frame = -3 Query: 273 NFSQSTPTSSAFIPSDLLGSILSV*SIPR 187 NFS S TS +F SD +GS+L+ +PR Sbjct: 88 NFSGSFSTSFSFSMSDEIGSVLAFIMVPR 116 >At1g25375.1 68414.m03149 metallo-beta-lactamase family protein Length = 524 Score = 28.7 bits (61), Expect = 4.4 Identities = 16/32 (50%), Positives = 20/32 (62%) Frame = +2 Query: 2 LVVDGNDVLEFKLVRSVDDLENEETSFGPDMC 97 L +D +DV E++ VRSV EE FGPD C Sbjct: 92 LGIDISDVGEWRFVRSV-----EEPEFGPDSC 118 >At5g03500.1 68418.m00306 transcriptional co-activator-related low similarity to transcriptional co-activator CRSP33 [Homo sapiens] GI:4220890 Length = 443 Score = 28.3 bits (60), Expect = 5.8 Identities = 15/45 (33%), Positives = 23/45 (51%) Frame = +1 Query: 253 WGALTKVIAPGYITNLDHFVSQLKKDESFTPHGKMLHAFNVTPFD 387 W L+K APGY T L + +L ++ F GK+ H + F+ Sbjct: 205 WCKLSK--APGYDTRLREYTVKLVLEKHFASCGKITHIYVPRDFE 247 >At1g71720.1 68414.m08290 S1 RNA-binding domain-containing protein contains Pfam domain, PF00575: S1 RNA binding domain Length = 487 Score = 28.3 bits (60), Expect = 5.8 Identities = 16/33 (48%), Positives = 19/33 (57%), Gaps = 1/33 (3%) Frame = +1 Query: 262 LTKVIAPGYITNLDHFVSQLKKD-ESFTPHGKM 357 LTK I P Y LD+ + LK D E F +GKM Sbjct: 186 LTKEILPLYDKELDYLLCDLKYDAEEFLVNGKM 218 >At1g73490.1 68414.m08508 RNA recognition motif (RRM)-containing protein contains INTERPRO:IPR000504 RNA-binding region RNP-1 (RNA recognition motif) domain Length = 259 Score = 27.9 bits (59), Expect = 7.7 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 4/29 (13%) Frame = -1 Query: 545 LKNCEEC----PLIIITSMNDAASTYHRR 471 LK+C+ C P +++ +M+DA YH+R Sbjct: 205 LKHCQRCRNYRPWLVLKAMSDACFEYHQR 233 Database: arabidopsis Posted date: Oct 4, 2007 10:56 AM Number of letters in database: 12,070,560 Number of sequences in database: 28,952 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 16,555,481 Number of Sequences: 28952 Number of extensions: 353195 Number of successful extensions: 762 Number of sequences better than 10.0: 7 Number of HSP's better than 10.0 without gapping: 745 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 762 length of database: 12,070,560 effective HSP length: 79 effective length of database: 9,783,352 effective search space used: 1682736544 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
- SilkBase 1999-2023 -