Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1401
         (782 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ...    30   0.33 
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||...    29   0.99 
SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit...    26   5.3  
SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|...    26   5.3  
SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr...    25   9.3  

>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 408

 Score = 30.3 bits (65), Expect = 0.33
 Identities = 13/28 (46%), Positives = 22/28 (78%)
 Frame = +3

Query: 90  GITLTTSTMARTMMF*KT*NLNCRKMKW 173
           G+T+ TS+MART+   +  +LNC+K++W
Sbjct: 255 GLTVWTSSMARTIQTAR--HLNCQKLEW 280


>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 404

 Score = 28.7 bits (61), Expect = 0.99
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +2

Query: 551 HSWSPIQASCFILHAYISSN 610
           H+WSPI + C I  AY SS+
Sbjct: 151 HAWSPIASHCLIATAYRSSS 170


>SPAC29A4.02c |||translation elongation factor EF-1 gamma subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 409

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 13/33 (39%), Positives = 20/33 (60%)
 Frame = -2

Query: 628 ISPVLAIATDVGMQNKTRCLNGRPAVKGSPIVR 530
           +S  LAIA  +   NKTR LNG  A + + +++
Sbjct: 63  LSETLAIAFYLASLNKTRALNGTTAEEKAKVLQ 95


>SPCPB1C11.03 |||cysteine transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 570

 Score = 26.2 bits (55), Expect = 5.3
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = -3

Query: 363 CIFNYRSLVEVLISIGFVESIFVP 292
           C +NY  L+ +   +GF ES  +P
Sbjct: 186 CAYNYGGLIALRFFLGFTESCLLP 209


>SPCC965.13 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 537

 Score = 25.4 bits (53), Expect = 9.3
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +3

Query: 723 SLNLPHSVTLLEHWIWFAW 779
           S+  P    L +HW WF W
Sbjct: 228 SIGSPIGEALYDHWRWFYW 246


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,293,250
Number of Sequences: 5004
Number of extensions: 69498
Number of successful extensions: 192
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 179
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 379359666
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)