BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1401 (782 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) 67 2e-11 SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) 60 3e-09 SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) 35 0.065 SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) 34 0.11 SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 1.1 SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) 29 4.2 SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 5.6 SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043) 28 7.4 SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32) 28 9.8 SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 9.8 >SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36) Length = 821 Score = 66.9 bits (156), Expect = 2e-11 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%) Frame = +1 Query: 256 GQPVIFHRADRVWDENTFNESNAYQNFD-KGPIVEDTILVLDPGSGSVLHSWGAYI-FYM 429 G I HRA R WD NTF E+ + + P+ + +L L+P S V+ G+ F + Sbjct: 195 GNVTILHRAGRPWDGNTFYENTDVLRKELREPLKTNVLLWLNPQSELVMREEGSKAGFVL 254 Query: 430 PHGLTLDHHDNVWVTDVAKHQV 495 PHGL+ D H N+W TDV HQV Sbjct: 255 PHGLSFDQHGNMWATDVGLHQV 276 Score = 52.4 bits (120), Expect = 4e-07 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%) Frame = +3 Query: 525 PTLTIGEPFTAGLPF-RHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAG 683 P++ +G + G ++ FC PT VA+ G IF+ADGYCN ++VK + G Sbjct: 529 PSMVLGTKYEPGSTLSEEKIQFCKPTDVAVDEEGNIFIADGYCNQRVVKLDKNG 582 >SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34) Length = 750 Score = 59.7 bits (138), Expect = 3e-09 Identities = 22/28 (78%), Positives = 25/28 (89%) Frame = +1 Query: 421 FYMPHGLTLDHHDNVWVTDVAKHQVYKY 504 FYMPHGLT+DH DN W+TDVA HQV+KY Sbjct: 150 FYMPHGLTIDHEDNTWITDVALHQVHKY 177 Score = 57.2 bits (132), Expect = 1e-08 Identities = 26/56 (46%), Positives = 35/56 (62%) Frame = +3 Query: 525 PTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 692 P L +GE G +H FC P VAI +TG +VADGYCN++++KF+ G LL Sbjct: 185 PVLVLGEMLRPGSDDKH---FCQPNDVAIETTGVFYVADGYCNSRVMKFSPEGKLL 237 >SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17) Length = 415 Score = 35.1 bits (77), Expect = 0.065 Identities = 11/29 (37%), Positives = 20/29 (68%) Frame = +1 Query: 424 YMPHGLTLDHHDNVWVTDVAKHQVYKYTQ 510 + PHG+T+D DN+ V D H+++K+ + Sbjct: 348 WQPHGVTVDKDDNILVCDTGNHRLHKFNK 376 >SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1660 Score = 34.3 bits (75), Expect = 0.11 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%) Frame = +1 Query: 304 TFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVW 468 T N+ + DK + D + DP + S+G F +PHG+ D DN++ Sbjct: 1448 TANDDGILERLDKSGDLVDNRIPTDPSLSRFVKSFGIAGGGDGCFNLPHGVATDPSDNIY 1507 Query: 469 VTDVAKHQVYKYT 507 V D ++ +T Sbjct: 1508 VADSGNSRLQIFT 1520 Score = 28.3 bits (60), Expect = 7.4 Identities = 14/33 (42%), Positives = 20/33 (60%) Frame = +3 Query: 582 LFCMPTSVAIASTGEIFVADGYCNNQIVKFNAA 680 L PT VA+ G ++VAD + NN+I F+ A Sbjct: 1627 LMRFPTGVAVDKAGHLYVADTF-NNRIQVFSLA 1658 >SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 767 Score = 31.1 bits (67), Expect = 1.1 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%) Frame = +1 Query: 358 DTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVWVTDVAKHQV 495 DTI V DP SG L+S G F P GL +D D ++V D H+V Sbjct: 662 DTIQVFDP-SGDYLYSVGGTGHGEGRFREPRGLHVDARDRLFVCDSGNHRV 711 >SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0) Length = 839 Score = 29.1 bits (62), Expect = 4.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 528 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 650 TLT+ E TA + + H V +CM + + E+F+ G C Sbjct: 224 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 263 Score = 29.1 bits (62), Expect = 4.2 Identities = 14/41 (34%), Positives = 22/41 (53%) Frame = +3 Query: 528 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 650 TLT+ E TA + + H V +CM + + E+F+ G C Sbjct: 635 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 674 >SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1712 Score = 28.7 bits (61), Expect = 5.6 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%) Frame = +1 Query: 424 YMPHGLTLDHHD-NVWVTDVAKHQV 495 + P+GLT+DH+D ++ TD +H + Sbjct: 324 FWPNGLTIDHNDKRIYWTDAKQHHI 348 >SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043) Length = 949 Score = 28.3 bits (60), Expect = 7.4 Identities = 9/24 (37%), Positives = 15/24 (62%) Frame = -3 Query: 519 CGYLRILIYLMFCDVSYPHVIMMI 448 CGY+R+++ L C Y V+M + Sbjct: 834 CGYVRVVMSLWLCPCGYVRVVMSV 857 >SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32) Length = 773 Score = 27.9 bits (59), Expect = 9.8 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -3 Query: 345 SLVEVLISIGFVESIFVPYSICPVKYHGLSQELMDTAV 232 ++ EVL G +++ F ++ C +G+S E+MDT V Sbjct: 580 AVAEVLDKDGSIQNYFRKHAPCETGPNGISPEVMDTYV 617 >SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 711 Score = 27.9 bits (59), Expect = 9.8 Identities = 11/26 (42%), Positives = 16/26 (61%) Frame = +1 Query: 418 IFYMPHGLTLDHHDNVWVTDVAKHQV 495 +F P G+T D DN+ V+D H+V Sbjct: 636 LFDGPEGVTCDDEDNILVSDYHNHRV 661 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 24,510,429 Number of Sequences: 59808 Number of extensions: 508027 Number of successful extensions: 1190 Number of sequences better than 10.0: 10 Number of HSP's better than 10.0 without gapping: 1091 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 1189 length of database: 16,821,457 effective HSP length: 81 effective length of database: 11,977,009 effective search space used: 2143884611 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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