SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1401
         (782 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)            67   2e-11
SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)                   60   3e-09
SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)                   35   0.065
SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   1.1  
SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)                       29   4.2  
SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   5.6  
SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)                    28   7.4  
SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)                 28   9.8  
SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)                 28   9.8  

>SB_41435| Best HMM Match : Cu2_monoox_C (HMM E-Value=4e-36)
          Length = 821

 Score = 66.9 bits (156), Expect = 2e-11
 Identities = 34/82 (41%), Positives = 46/82 (56%), Gaps = 2/82 (2%)
 Frame = +1

Query: 256 GQPVIFHRADRVWDENTFNESNAYQNFD-KGPIVEDTILVLDPGSGSVLHSWGAYI-FYM 429
           G   I HRA R WD NTF E+      + + P+  + +L L+P S  V+   G+   F +
Sbjct: 195 GNVTILHRAGRPWDGNTFYENTDVLRKELREPLKTNVLLWLNPQSELVMREEGSKAGFVL 254

Query: 430 PHGLTLDHHDNVWVTDVAKHQV 495
           PHGL+ D H N+W TDV  HQV
Sbjct: 255 PHGLSFDQHGNMWATDVGLHQV 276



 Score = 52.4 bits (120), Expect = 4e-07
 Identities = 21/54 (38%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
 Frame = +3

Query: 525 PTLTIGEPFTAGLPF-RHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAG 683
           P++ +G  +  G      ++ FC PT VA+   G IF+ADGYCN ++VK +  G
Sbjct: 529 PSMVLGTKYEPGSTLSEEKIQFCKPTDVAVDEEGNIFIADGYCNQRVVKLDKNG 582


>SB_42994| Best HMM Match : NHL (HMM E-Value=8.4e-34)
          Length = 750

 Score = 59.7 bits (138), Expect = 3e-09
 Identities = 22/28 (78%), Positives = 25/28 (89%)
 Frame = +1

Query: 421 FYMPHGLTLDHHDNVWVTDVAKHQVYKY 504
           FYMPHGLT+DH DN W+TDVA HQV+KY
Sbjct: 150 FYMPHGLTIDHEDNTWITDVALHQVHKY 177



 Score = 57.2 bits (132), Expect = 1e-08
 Identities = 26/56 (46%), Positives = 35/56 (62%)
 Frame = +3

Query: 525 PTLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 692
           P L +GE    G   +H   FC P  VAI +TG  +VADGYCN++++KF+  G LL
Sbjct: 185 PVLVLGEMLRPGSDDKH---FCQPNDVAIETTGVFYVADGYCNSRVMKFSPEGKLL 237


>SB_27124| Best HMM Match : NHL (HMM E-Value=6.4e-17)
          Length = 415

 Score = 35.1 bits (77), Expect = 0.065
 Identities = 11/29 (37%), Positives = 20/29 (68%)
 Frame = +1

Query: 424 YMPHGLTLDHHDNVWVTDVAKHQVYKYTQ 510
           + PHG+T+D  DN+ V D   H+++K+ +
Sbjct: 348 WQPHGVTVDKDDNILVCDTGNHRLHKFNK 376


>SB_24569| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1660

 Score = 34.3 bits (75), Expect = 0.11
 Identities = 19/73 (26%), Positives = 32/73 (43%), Gaps = 5/73 (6%)
 Frame = +1

Query: 304  TFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVW 468
            T N+    +  DK   + D  +  DP     + S+G        F +PHG+  D  DN++
Sbjct: 1448 TANDDGILERLDKSGDLVDNRIPTDPSLSRFVKSFGIAGGGDGCFNLPHGVATDPSDNIY 1507

Query: 469  VTDVAKHQVYKYT 507
            V D    ++  +T
Sbjct: 1508 VADSGNSRLQIFT 1520



 Score = 28.3 bits (60), Expect = 7.4
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = +3

Query: 582  LFCMPTSVAIASTGEIFVADGYCNNQIVKFNAA 680
            L   PT VA+   G ++VAD + NN+I  F+ A
Sbjct: 1627 LMRFPTGVAVDKAGHLYVADTF-NNRIQVFSLA 1658


>SB_47830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 767

 Score = 31.1 bits (67), Expect = 1.1
 Identities = 21/51 (41%), Positives = 26/51 (50%), Gaps = 5/51 (9%)
 Frame = +1

Query: 358 DTILVLDPGSGSVLHSWGAY-----IFYMPHGLTLDHHDNVWVTDVAKHQV 495
           DTI V DP SG  L+S G        F  P GL +D  D ++V D   H+V
Sbjct: 662 DTIQVFDP-SGDYLYSVGGTGHGEGRFREPRGLHVDARDRLFVCDSGNHRV 711


>SB_52655| Best HMM Match : MFS_1 (HMM E-Value=0)
          Length = 839

 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 528 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 650
           TLT+ E  TA + + H V +CM + +      E+F+  G C
Sbjct: 224 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 263



 Score = 29.1 bits (62), Expect = 4.2
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = +3

Query: 528 TLTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYC 650
           TLT+ E  TA + + H V +CM + +      E+F+  G C
Sbjct: 635 TLTL-ETLTAFVSYVHLVKYCMESGIPEKDASELFIFIGAC 674


>SB_51898| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1712

 Score = 28.7 bits (61), Expect = 5.6
 Identities = 10/25 (40%), Positives = 18/25 (72%), Gaps = 1/25 (4%)
 Frame = +1

Query: 424 YMPHGLTLDHHD-NVWVTDVAKHQV 495
           + P+GLT+DH+D  ++ TD  +H +
Sbjct: 324 FWPNGLTIDHNDKRIYWTDAKQHHI 348


>SB_41162| Best HMM Match : FbpA (HMM E-Value=0.043)
          Length = 949

 Score = 28.3 bits (60), Expect = 7.4
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = -3

Query: 519 CGYLRILIYLMFCDVSYPHVIMMI 448
           CGY+R+++ L  C   Y  V+M +
Sbjct: 834 CGYVRVVMSLWLCPCGYVRVVMSV 857


>SB_44610| Best HMM Match : PI3Ka (HMM E-Value=6.1e-32)
          Length = 773

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 13/38 (34%), Positives = 23/38 (60%)
 Frame = -3

Query: 345 SLVEVLISIGFVESIFVPYSICPVKYHGLSQELMDTAV 232
           ++ EVL   G +++ F  ++ C    +G+S E+MDT V
Sbjct: 580 AVAEVLDKDGSIQNYFRKHAPCETGPNGISPEVMDTYV 617


>SB_74| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 711

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1

Query: 418 IFYMPHGLTLDHHDNVWVTDVAKHQV 495
           +F  P G+T D  DN+ V+D   H+V
Sbjct: 636 LFDGPEGVTCDDEDNILVSDYHNHRV 661


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 24,510,429
Number of Sequences: 59808
Number of extensions: 508027
Number of successful extensions: 1190
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1091
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1189
length of database: 16,821,457
effective HSP length: 81
effective length of database: 11,977,009
effective search space used: 2143884611
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -