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Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1401
         (782 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical pr...    84   9e-17
U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical pr...    60   2e-09
L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleo...    29   2.8  
AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc fi...    29   2.8  
AC006833-7|AAF60945.1|  289|Caenorhabditis elegans Hypothetical ...    29   3.7  
U41992-9|AAK93854.1|  294|Caenorhabditis elegans Hypothetical pr...    28   6.6  
AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    28   6.6  
Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical pr...    28   8.7  

>U88175-5|AAB42278.2|  350|Caenorhabditis elegans Hypothetical
           protein F21F3.1 protein.
          Length = 350

 Score = 84.2 bits (199), Expect = 9e-17
 Identities = 41/90 (45%), Positives = 55/90 (61%)
 Frame = +1

Query: 256 GQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPH 435
           G  V FHR+ RVWDE +FN+   + N D G I   TI ++      V+  +GA +FYMPH
Sbjct: 71  GHIVAFHRSGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPH 128

Query: 436 GLTLDHHDNVWVTDVAKHQVYKYTQVTTDI 525
           GLT+D++ + WVTDV  HQV+K    T  I
Sbjct: 129 GLTIDNNGDYWVTDVGSHQVHKIDAKTQKI 158



 Score = 66.1 bits (154), Expect = 3e-11
 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%)
 Frame = +3

Query: 531 LTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY 710
           +++GE    G    H   FC PT VA+A  G IFVADGYCN++I+KF+A G L+  I A 
Sbjct: 160 MSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQINAA 216

Query: 711 SD---TWSLNLPHSVTLLE 758
           ++        +PHS++L+E
Sbjct: 217 TEENQPSEFVVPHSLSLIE 235


>U80438-6|AAB37637.2|  663|Caenorhabditis elegans Hypothetical
           protein T19B4.1 protein.
          Length = 663

 Score = 60.1 bits (139), Expect = 2e-09
 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%)
 Frame = +1

Query: 259 QPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSGSVLH-SWGAYIFYMP 432
           Q ++F RA RVWD +TF+  N     DK PI +  ILV+   G+ + L    G   FY+P
Sbjct: 370 QLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQTKLERKLGGGQFYLP 427

Query: 433 HGLTLDHHDNVWVTDVAKHQVYKY 504
           HG+ +D    V+ TDV  H V K+
Sbjct: 428 HGIYVDKDGFVYTTDVGSHTVAKW 451



 Score = 37.5 bits (83), Expect = 0.011
 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%)
 Frame = +3

Query: 534 TIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPA 707
           T GE    G    H   +C PT +      +++V DGYCN+++V  +  G  +    +P 
Sbjct: 463 TSGELLMPGSDQHH---YCKPTGITRVED-QLYVTDGYCNSRVVVLDLNGKRIRQFGLPG 518

Query: 708 YSDTWSLNLPHSV 746
             D    NLPH +
Sbjct: 519 -EDAGQFNLPHDI 530


>L14324-3|AAA28185.1|  851|Caenorhabditis elegans Abnormal nucleoli
           protein 1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 594 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 692
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>AF047027-1|AAC14263.1|  851|Caenorhabditis elegans B box zinc
           finger protein Ncl-1 protein.
          Length = 851

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 594 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 692
           P  V I S GE+ VAD + N  +  F+  GT++
Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798


>AC006833-7|AAF60945.1|  289|Caenorhabditis elegans Hypothetical
           protein ZK616.7 protein.
          Length = 289

 Score = 29.1 bits (62), Expect = 3.7
 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%)
 Frame = +3

Query: 579 VLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHS--VTL 752
           V+ C  T        E F  + +C  Q  K + +     T+     T  LNL +     L
Sbjct: 102 VMLCQFTETNREKCAEYFPRNAHCCLQFDKMSVSYEDS-TVNKSLVTTRLNLSYEGETRL 160

Query: 753 LEHWIWFAWP 782
           + HW+W  WP
Sbjct: 161 ITHWLWKEWP 170


>U41992-9|AAK93854.1|  294|Caenorhabditis elegans Hypothetical
           protein F32E10.7 protein.
          Length = 294

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 13/47 (27%), Positives = 25/47 (53%)
 Frame = +2

Query: 203 PQQSLNVGQITAVSINSWDSP*YFTGQIEYGTKILSTNPMLIKTSTR 343
           P++S  +G++T   I++       +  IEY   +LS+NP   +  T+
Sbjct: 191 PEKSEKLGELTMQYIDALSQAIMISSHIEYSHHVLSSNPKFQQMCTQ 237


>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%)
 Frame = +3

Query: 579 VLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHS--VTL 752
           V+ C           E F  + +C  Q  KF+       T+     T  LNL +     L
Sbjct: 363 VMLCQFLETNREKCAEYFPRNAHCCLQFDKFSV-NYEDSTVNKSLVTTRLNLSYEGETRL 421

Query: 753 LEHWIWFAWP 782
           + HW+W  WP
Sbjct: 422 ITHWLWKEWP 431


>Z68009-2|CAA92004.2|  891|Caenorhabditis elegans Hypothetical
           protein R09A8.2 protein.
          Length = 891

 Score = 27.9 bits (59), Expect = 8.7
 Identities = 11/42 (26%), Positives = 23/42 (54%)
 Frame = +2

Query: 68  NCEPEAVRDNFDYFNYGANDDVLKNLESQLSKDEVVLRPQEV 193
           N + E +  N +Y+ + + DD L +++    +   + RP+EV
Sbjct: 178 NNKTEKLETNAEYYGFKSYDDSLYDIQPNTKRPAPLYRPEEV 219


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,163,451
Number of Sequences: 27780
Number of extensions: 386242
Number of successful extensions: 947
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 911
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 945
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1893203640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

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