BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1401 (782 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical pr... 84 9e-17 U80438-6|AAB37637.2| 663|Caenorhabditis elegans Hypothetical pr... 60 2e-09 L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleo... 29 2.8 AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc fi... 29 2.8 AC006833-7|AAF60945.1| 289|Caenorhabditis elegans Hypothetical ... 29 3.7 U41992-9|AAK93854.1| 294|Caenorhabditis elegans Hypothetical pr... 28 6.6 AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical ... 28 6.6 Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical pr... 28 8.7 >U88175-5|AAB42278.2| 350|Caenorhabditis elegans Hypothetical protein F21F3.1 protein. Length = 350 Score = 84.2 bits (199), Expect = 9e-17 Identities = 41/90 (45%), Positives = 55/90 (61%) Frame = +1 Query: 256 GQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHSWGAYIFYMPH 435 G V FHR+ RVWDE +FN+ + N D G I TI ++ V+ +GA +FYMPH Sbjct: 71 GHIVAFHRSGRVWDEKSFNDHETF-NKDLGVINNKTIAIISREK-KVIDEFGAGLFYMPH 128 Query: 436 GLTLDHHDNVWVTDVAKHQVYKYTQVTTDI 525 GLT+D++ + WVTDV HQV+K T I Sbjct: 129 GLTIDNNGDYWVTDVGSHQVHKIDAKTQKI 158 Score = 66.1 bits (154), Expect = 3e-11 Identities = 34/79 (43%), Positives = 49/79 (62%), Gaps = 3/79 (3%) Frame = +3 Query: 531 LTIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAY 710 +++GE G H FC PT VA+A G IFVADGYCN++I+KF+A G L+ I A Sbjct: 160 MSLGEKMVPGEDQAH---FCKPTDVAVAKNGHIFVADGYCNSRILKFDAKGNLMAQINAA 216 Query: 711 SD---TWSLNLPHSVTLLE 758 ++ +PHS++L+E Sbjct: 217 TEENQPSEFVVPHSLSLIE 235 >U80438-6|AAB37637.2| 663|Caenorhabditis elegans Hypothetical protein T19B4.1 protein. Length = 663 Score = 60.1 bits (139), Expect = 2e-09 Identities = 34/84 (40%), Positives = 47/84 (55%), Gaps = 2/84 (2%) Frame = +1 Query: 259 QPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLD-PGSGSVLH-SWGAYIFYMP 432 Q ++F RA RVWD +TF+ N DK PI + ILV+ G+ + L G FY+P Sbjct: 370 QLLVFQRAGRVWDASTFDNYNIL--LDKKPIADPVILVISYSGNQTKLERKLGGGQFYLP 427 Query: 433 HGLTLDHHDNVWVTDVAKHQVYKY 504 HG+ +D V+ TDV H V K+ Sbjct: 428 HGIYVDKDGFVYTTDVGSHTVAKW 451 Score = 37.5 bits (83), Expect = 0.011 Identities = 22/73 (30%), Positives = 34/73 (46%), Gaps = 2/73 (2%) Frame = +3 Query: 534 TIGEPFTAGLPFRHRVLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL--LTIPA 707 T GE G H +C PT + +++V DGYCN+++V + G + +P Sbjct: 463 TSGELLMPGSDQHH---YCKPTGITRVED-QLYVTDGYCNSRVVVLDLNGKRIRQFGLPG 518 Query: 708 YSDTWSLNLPHSV 746 D NLPH + Sbjct: 519 -EDAGQFNLPHDI 530 >L14324-3|AAA28185.1| 851|Caenorhabditis elegans Abnormal nucleoli protein 1 protein. Length = 851 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 594 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 692 P V I S GE+ VAD + N + F+ GT++ Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798 >AF047027-1|AAC14263.1| 851|Caenorhabditis elegans B box zinc finger protein Ncl-1 protein. Length = 851 Score = 29.5 bits (63), Expect = 2.8 Identities = 13/33 (39%), Positives = 19/33 (57%) Frame = +3 Query: 594 PTSVAIASTGEIFVADGYCNNQIVKFNAAGTLL 692 P V I S GE+ VAD + N + F+ GT++ Sbjct: 766 PIGVGINSLGEVVVADNHNNFNLTVFSQDGTMI 798 >AC006833-7|AAF60945.1| 289|Caenorhabditis elegans Hypothetical protein ZK616.7 protein. Length = 289 Score = 29.1 bits (62), Expect = 3.7 Identities = 19/70 (27%), Positives = 28/70 (40%), Gaps = 2/70 (2%) Frame = +3 Query: 579 VLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHS--VTL 752 V+ C T E F + +C Q K + + T+ T LNL + L Sbjct: 102 VMLCQFTETNREKCAEYFPRNAHCCLQFDKMSVSYEDS-TVNKSLVTTRLNLSYEGETRL 160 Query: 753 LEHWIWFAWP 782 + HW+W WP Sbjct: 161 ITHWLWKEWP 170 >U41992-9|AAK93854.1| 294|Caenorhabditis elegans Hypothetical protein F32E10.7 protein. Length = 294 Score = 28.3 bits (60), Expect = 6.6 Identities = 13/47 (27%), Positives = 25/47 (53%) Frame = +2 Query: 203 PQQSLNVGQITAVSINSWDSP*YFTGQIEYGTKILSTNPMLIKTSTR 343 P++S +G++T I++ + IEY +LS+NP + T+ Sbjct: 191 PEKSEKLGELTMQYIDALSQAIMISSHIEYSHHVLSSNPKFQQMCTQ 237 >AF036700-2|AAB88365.1| 550|Caenorhabditis elegans Hypothetical protein M04G7.2 protein. Length = 550 Score = 28.3 bits (60), Expect = 6.6 Identities = 19/70 (27%), Positives = 27/70 (38%), Gaps = 2/70 (2%) Frame = +3 Query: 579 VLFCMPTSVAIASTGEIFVADGYCNNQIVKFNAAGTLLLTIPAYSDTWSLNLPHS--VTL 752 V+ C E F + +C Q KF+ T+ T LNL + L Sbjct: 363 VMLCQFLETNREKCAEYFPRNAHCCLQFDKFSV-NYEDSTVNKSLVTTRLNLSYEGETRL 421 Query: 753 LEHWIWFAWP 782 + HW+W WP Sbjct: 422 ITHWLWKEWP 431 >Z68009-2|CAA92004.2| 891|Caenorhabditis elegans Hypothetical protein R09A8.2 protein. Length = 891 Score = 27.9 bits (59), Expect = 8.7 Identities = 11/42 (26%), Positives = 23/42 (54%) Frame = +2 Query: 68 NCEPEAVRDNFDYFNYGANDDVLKNLESQLSKDEVVLRPQEV 193 N + E + N +Y+ + + DD L +++ + + RP+EV Sbjct: 178 NNKTEKLETNAEYYGFKSYDDSLYDIQPNTKRPAPLYRPEEV 219 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 18,163,451 Number of Sequences: 27780 Number of extensions: 386242 Number of successful extensions: 947 Number of sequences better than 10.0: 8 Number of HSP's better than 10.0 without gapping: 911 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 945 length of database: 12,740,198 effective HSP length: 80 effective length of database: 10,517,798 effective search space used: 1893203640 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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