Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1401
         (782 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.              25   1.1  
AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta...    25   1.1  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    23   2.4  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       22   5.6  

>AY823258-1|AAX18443.1|  145|Apis mellifera pburs protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 560 TSCEGFANSQGRISVVTCVYLYT*CF 483
           T CEGF NSQ + SV +       C+
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECY 92


>AM420632-1|CAM06632.1|  145|Apis mellifera bursicon subunit beta
           protein precursor protein.
          Length = 145

 Score = 24.6 bits (51), Expect = 1.1
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 560 TSCEGFANSQGRISVVTCVYLYT*CF 483
           T CEGF NSQ + SV +       C+
Sbjct: 67  TKCEGFCNSQVQPSVASTTGFSKECY 92


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 23.4 bits (48), Expect = 2.4
 Identities = 15/52 (28%), Positives = 24/52 (46%)
 Frame = +1

Query: 250 FLGQPVIFHRADRVWDENTFNESNAYQNFDKGPIVEDTILVLDPGSGSVLHS 405
           F G   I+ ++D +W  +    ++    FD+  I   T LV   GS S + S
Sbjct: 111 FDGINYIYVKSDDIWVPDISVYNSGDMTFDQTGIPPTTCLVFSSGSVSCVPS 162


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 22.2 bits (45), Expect = 5.6
 Identities = 9/23 (39%), Positives = 15/23 (65%)
 Frame = +1

Query: 295 DENTFNESNAYQNFDKGPIVEDT 363
           +E+ FN+ N +Q  DK   +E+T
Sbjct: 56  NESEFNDENYWQCNDKKTDIEET 78


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,074
Number of Sequences: 438
Number of extensions: 5336
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 24639531
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)