Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1397
(682 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70268-2|CAA94218.1| 98|Caenorhabditis elegans Hypothetical pr... 30 1.8
Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical pr... 29 4.1
Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical pr... 29 4.1
U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein. 29 4.1
U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-l... 27 9.4
U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-l... 27 9.4
AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interacto... 27 9.4
AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic helix-l... 27 9.4
>Z70268-2|CAA94218.1| 98|Caenorhabditis elegans Hypothetical
protein T21E8.5 protein.
Length = 98
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/24 (50%), Positives = 16/24 (66%)
Frame = -2
Query: 633 IISPSSTHVFKYHFVAVKAKSAMC 562
+I+ S HVFK HF A++ K A C
Sbjct: 42 MITEFSLHVFKEHFEAIRRKGAYC 65
>Z92822-5|CAD45612.3| 743|Caenorhabditis elegans Hypothetical
protein ZK520.4d protein.
Length = 743
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 199 LNFRPVSEVWWRQSQSDVYD 140
+N RP++ V W SDVYD
Sbjct: 26 INLRPITNVQWHHKFSDVYD 45
>Z92822-4|CAD18893.2| 791|Caenorhabditis elegans Hypothetical
protein ZK520.4c protein.
Length = 791
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 199 LNFRPVSEVWWRQSQSDVYD 140
+N RP++ V W SDVYD
Sbjct: 43 INLRPITNVQWHHKFSDVYD 62
>Z92822-3|CAB07302.3| 774|Caenorhabditis elegans Hypothetical
protein ZK520.4b protein.
Length = 774
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 199 LNFRPVSEVWWRQSQSDVYD 140
+N RP++ V W SDVYD
Sbjct: 26 INLRPITNVQWHHKFSDVYD 45
>Z92822-2|CAB70188.2| 850|Caenorhabditis elegans Hypothetical
protein ZK520.4a protein.
Length = 850
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 199 LNFRPVSEVWWRQSQSDVYD 140
+N RP++ V W SDVYD
Sbjct: 102 INLRPITNVQWHHKFSDVYD 121
>Z73972-4|CAA98260.1| 666|Caenorhabditis elegans Hypothetical
protein F15H10.7 protein.
Length = 666
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/30 (33%), Positives = 16/30 (53%)
Frame = -2
Query: 615 THVFKYHFVAVKAKSAMCKNSICNQRVKTF 526
+ +FKYH+ + KS+ KN + Q F
Sbjct: 165 SEIFKYHYTQIVPKSSNIKNKVIEQSTSDF 194
>U58084-1|AAC47121.1| 743|Caenorhabditis elegans CUL-2 protein.
Length = 743
Score = 28.7 bits (61), Expect = 4.1
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = -1
Query: 199 LNFRPVSEVWWRQSQSDVYD 140
+N RP++ V W SDVYD
Sbjct: 26 INLRPITNVQWHHKFSDVYD 45
>U10401-4|AAN65289.1| 937|Caenorhabditis elegans Myc and mondo-like
protein 1, isoformb protein.
Length = 937
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 243 LLPGEIARMVERKLGRHYAP 302
LL G++A VE K GRHY P
Sbjct: 744 LLNGKMAVKVEEKSGRHYLP 763
>U10401-3|AAA19059.2| 1009|Caenorhabditis elegans Myc and mondo-like
protein 1, isoforma protein.
Length = 1009
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 243 LLPGEIARMVERKLGRHYAP 302
LL G++A VE K GRHY P
Sbjct: 744 LLNGKMAVKVEEKSGRHYLP 763
>AF264757-1|AAK20949.1| 1009|Caenorhabditis elegans Mlx interactor
protein.
Length = 1009
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 243 LLPGEIARMVERKLGRHYAP 302
LL G++A VE K GRHY P
Sbjct: 744 LLNGKMAVKVEEKSGRHYLP 763
>AF213473-1|AAL50027.1| 913|Caenorhabditis elegans basic
helix-loop-helix leucinezipper WBSCR14-like protein
protein.
Length = 913
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/20 (60%), Positives = 14/20 (70%)
Frame = +3
Query: 243 LLPGEIARMVERKLGRHYAP 302
LL G++A VE K GRHY P
Sbjct: 648 LLNGKMAVKVEEKSGRHYLP 667
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,028,685
Number of Sequences: 27780
Number of extensions: 294099
Number of successful extensions: 553
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1550199966
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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