Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1394
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    25   0.76 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    24   1.00 
DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase ...    23   1.7  
DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase ...    23   1.7  
DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated...    22   5.3  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.3  

>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 24.6 bits (51), Expect = 0.76
 Identities = 7/20 (35%), Positives = 15/20 (75%)
 Frame = +1

Query: 388 VDSVLDVVRKEAESCDCLQG 447
           +DS+++++R   ++CD L G
Sbjct: 106 IDSIINIIRVRVDACDRLWG 125



 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = +3

Query: 495 HPPHLKIREEYPDRIMNTYSVVPSPKVSDT 584
           H P + I +   D+I+  Y +  S + SD+
Sbjct: 141 HQPRIIIIDLKTDKILRIYPLKSSDQTSDS 170


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 24.2 bits (50), Expect = 1.00
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = -1

Query: 118 LPELSSDLVAALTSLDMYDFPHFVLFM 38
           L E + +L  AL+S++   F HFVL M
Sbjct: 870 LVEFALELKKALSSINEQSFNHFVLKM 896


>DQ013068-1|AAY81956.1|  931|Apis mellifera dusty protein kinase
           isoform B protein.
          Length = 931

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = -1

Query: 298 VRKVQSGQSPWCRAPVDEDGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 149
           V  +Q+ + PW   P+++     +  +    + Y   L++Q+ +P++  G
Sbjct: 83  VENLQANEKPWSTLPIED-----LTKSDNEDITYPTVLEVQLNLPILKDG 127


>DQ013067-1|AAY81955.1|  969|Apis mellifera dusty protein kinase
           isoform A protein.
          Length = 969

 Score = 23.4 bits (48), Expect = 1.7
 Identities = 10/50 (20%), Positives = 25/50 (50%)
 Frame = -1

Query: 298 VRKVQSGQSPWCRAPVDEDGAGHVLAAGGFIVVYIDALQLQVRVPMVGTG 149
           V  +Q+ + PW   P+++     +  +    + Y   L++Q+ +P++  G
Sbjct: 121 VENLQANEKPWSTLPIED-----LTKSDNEDITYPTVLEVQLNLPILKDG 165


>DQ667195-1|ABG75747.1|  469|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 469

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 167 DSDLQLERINVYYNEASGGKYVPRAILVDWSP 262
           D+ L+   I  Y N+  GG++V   I   W+P
Sbjct: 72  DARLKFSNIAPYLNQIYGGQFVRDLI---WTP 100


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.3
 Identities = 11/34 (32%), Positives = 16/34 (47%)
 Frame = +3

Query: 444 GIPTDTLARRRHRFRYGHPPHLKIREEYPDRIMN 545
           GIP+ TL +R HR     P      + + D  +N
Sbjct: 438 GIPSTTLWQRAHRLGIDTPKKDGPTKSWSDESLN 471


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 158,158
Number of Sequences: 438
Number of extensions: 3322
Number of successful extensions: 8
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)