Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1393
         (722 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q97KD1 Cluster: Probably membrane protein; n=1; Clostri...    33   7.1  
UniRef50_A2DUJ0 Cluster: Putative uncharacterized protein; n=1; ...    33   7.1  
UniRef50_A5AXC3 Cluster: Putative uncharacterized protein; n=1; ...    33   9.4  

>UniRef50_Q97KD1 Cluster: Probably membrane protein; n=1;
           Clostridium acetobutylicum|Rep: Probably membrane
           protein - Clostridium acetobutylicum
          Length = 495

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 17/51 (33%), Positives = 28/51 (54%), Gaps = 5/51 (9%)
 Frame = +2

Query: 569 LILMCMYLVNNYNMYVCYDVLWGFLFSSSYDIT*R-----NLMLVCAFCIL 706
           L++    L+ N N  V   ++W ++F   YDIT R      L+L+C+F +L
Sbjct: 110 LLVYKFALIRNKNKVVSLIIMWVYIFGDFYDITYRPVLISKLILLCSFILL 160


>UniRef50_A2DUJ0 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 690

 Score = 33.1 bits (72), Expect = 7.1
 Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
 Frame = +3

Query: 360 VNEMDEFS--AKKNNSRVENWGVLCDKIQGFFKTFKSQDILSLNHVRIYCRRIAFTYS 527
           VN+   F   A KN S + ++ VL DKI     TF  Q +  LN+  I+C +++ TYS
Sbjct: 619 VNDFFNFGLFAIKNRSLLGSFIVL-DKILNSGFTFTDQYMAELNYWNIFCSKLSITYS 675


>UniRef50_A5AXC3 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 164

 Score = 32.7 bits (71), Expect = 9.4
 Identities = 17/31 (54%), Positives = 19/31 (61%)
 Frame = -2

Query: 400 ELFFFAENSSISFTSPIVPLKICPGQIKRTS 308
           +L FF   SSIS TSP VPLK+   Q   TS
Sbjct: 99  DLLFFTHLSSISTTSPYVPLKVENFQYSETS 129


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 618,682,933
Number of Sequences: 1657284
Number of extensions: 11574064
Number of successful extensions: 22957
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 22342
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22951
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)