Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1393
         (722 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|ch...    28   1.6  
SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces p...    27   2.7  
SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces ...    26   6.3  
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    25   8.3  

>SPAC959.04c |||mannosyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 298

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = +3

Query: 420 VLCDKIQGFFKTFKSQDILSLNHV 491
           ++C++ +  F TFK  DI+  NHV
Sbjct: 150 LVCEEKKDIFSTFKDSDIVFTNHV 173


>SPBC337.03 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 387

 Score = 27.1 bits (57), Expect = 2.7
 Identities = 13/31 (41%), Positives = 19/31 (61%)
 Frame = +1

Query: 259 PQSLVSKVKEVILVWCQMCV*FVPDIFLMVQ 351
           P S+ +K+K V  VWCQ  + F  +I L +Q
Sbjct: 97  PASIKTKIKYVFDVWCQRGI-FSKEILLSLQ 126


>SPCC320.07c |mde7||RNA-binding protein Mde7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 761

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 16/44 (36%), Positives = 20/44 (45%)
 Frame = -3

Query: 447 KTLGSYRREHPNFPLVNYSFSLKIRPSHLHRPLYH*KYVRDKSN 316
           +T   Y+  HPN       FSL  RPS+     +  K   DKSN
Sbjct: 455 QTSFDYQPNHPNAISPKAKFSLPSRPSYHKDNSFISKQAIDKSN 498


>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 13/38 (34%), Positives = 19/38 (50%)
 Frame = +3

Query: 423  LCDKIQGFFKTFKSQDILSLNHVRIYCRRIAFTYSLFL 536
            LC  I    +T+K    +SL+ +   C   +FT S FL
Sbjct: 1514 LCKDINPEQRTYKCNLSISLSQIDDLCNGFSFTTSTFL 1551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,706,731
Number of Sequences: 5004
Number of extensions: 54207
Number of successful extensions: 102
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 102
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)