Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1393
         (722 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0266 + 27280592-27281668                                         29   2.8  
06_01_0478 + 3407882-3407999,3408119-3408278,3408377-3408448,340...    28   8.6  
02_02_0481 - 10815853-10816229,10816877-10816942,10817009-108173...    28   8.6  

>02_05_0266 + 27280592-27281668
          Length = 358

 Score = 29.5 bits (63), Expect = 2.8
 Identities = 19/58 (32%), Positives = 27/58 (46%)
 Frame = -3

Query: 516 RLFFCNRYERD*VTIYPDF*TS*KTLGSYRREHPNFPLVNYSFSLKIRPSHLHRPLYH 343
           RLFFC R +R    +YPD      T  ++RR         + ++L I P+ L   L H
Sbjct: 63  RLFFCPREDR----LYPDLRMPALTAEAHRRRRRRLYASPHGWTLAIDPTDLAASLLH 116


>06_01_0478 +
           3407882-3407999,3408119-3408278,3408377-3408448,
           3409599-3409670,3410471-3410539,3410654-3410659,
           3410951-3411022,3411103-3411174,3411881-3411935,
           3412139-3412366
          Length = 307

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 10/37 (27%), Positives = 18/37 (48%)
 Frame = -3

Query: 120 HPCGIIT*RLVSTQSKWNKCKCNRSQLHISHLSIVSF 10
           HPCG +     S       C C+ ++  I+HL++  +
Sbjct: 62  HPCGKLVWSNSSEMEASINCSCSSNECRITHLNVTGY 98


>02_02_0481 -
           10815853-10816229,10816877-10816942,10817009-10817311,
           10817432-10817531,10818523-10818531
          Length = 284

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 12/39 (30%), Positives = 19/39 (48%)
 Frame = -1

Query: 437 DLIAENTPIFHS*IILFR*KFVHLIYIAHCTIKNMSGTN 321
           D I +  P++H  + LFR  ++H  +I  C      G N
Sbjct: 103 DGITKKVPLYHMALKLFRDGYLHEFFIDDCITPKEGGAN 141


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,897,484
Number of Sequences: 37544
Number of extensions: 289150
Number of successful extensions: 486
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 479
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 486
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)