Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1393
         (722 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U40935-6|AAL02505.1|  102|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical ...    29   4.4  
U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical pr...    28   5.9  

>U40935-6|AAL02505.1|  102|Caenorhabditis elegans Hypothetical
           protein F31E3.2c protein.
          Length = 102

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 382 ENSSISFTSPIVPLKICPGQIKRTSDTXXXXXXXXXXPEIVVGDYGDYYFQIF 224
           E   ++F S +  LK C   +KR +            P  +V DYGDY  ++F
Sbjct: 45  EYQKLAFKSRLQKLKKCRPHLKRRTYKVEEADPRPPVPRFIVDDYGDYEKRMF 97


>AC084161-2|AAK29732.3|  782|Caenorhabditis elegans Hypothetical
           protein Y92H12A.4 protein.
          Length = 782

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 18/53 (33%), Positives = 28/53 (52%)
 Frame = -2

Query: 526 LYVKAILLQ*IRT*LSDNIS*LLNVLKNPWILSQRTPQFSTRELFFFAENSSI 368
           L  K  LL+ IR  +  N+  + NVL N + +S  +  F+T++  F   NS I
Sbjct: 114 LLCKEQLLRLIREAVRQNVKQVENVLMNAFRMSIGSSDFATKQRIFMKLNSMI 166


>U41036-5|AAV28332.1|  475|Caenorhabditis elegans Hypothetical
           protein T14E8.4 protein.
          Length = 475

 Score = 28.3 bits (60), Expect = 5.9
 Identities = 16/40 (40%), Positives = 20/40 (50%)
 Frame = +1

Query: 343 MVQWAM*MRWTNFQRKRIIHEWKIGVFSAIRSKGFLRRSK 462
           MVQ       T  +R + +H +    FS  R K FLRRSK
Sbjct: 45  MVQCGKPSEKTQLERGKRLHSYLCAPFSLQRQKIFLRRSK 84


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,763,991
Number of Sequences: 27780
Number of extensions: 294905
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 598
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)