Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1393
         (722 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor p...    27   0.14 
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.41 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.41 
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.9  

>AJ547798-1|CAD67999.1|  587|Apis mellifera octopamine receptor
           protein.
          Length = 587

 Score = 27.5 bits (58), Expect = 0.14
 Identities = 19/68 (27%), Positives = 30/68 (44%)
 Frame = -2

Query: 388 FAENSSISFTSPIVPLKICPGQIKRTSDTXXXXXXXXXXPEIVVGDYGDYYFQIFSQLFF 209
           FA+N   + T+  VP+K CP   + T+D             +V    G +Y  +   LFF
Sbjct: 217 FAQNGPFNTTTIFVPVKPCPWICELTNDAGY----------VVYSALGSFYIPMLVMLFF 266

Query: 208 NYMNLVYN 185
            +   +YN
Sbjct: 267 YWR--IYN 272


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 613 CVLRCFVGIFVFIIIRYNLTKLNVSL 690
           CVL C+  I+  II+ + L  L VSL
Sbjct: 105 CVLSCWTNIYYIIILAWALFYLLVSL 130


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.41
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = +1

Query: 613 CVLRCFVGIFVFIIIRYNLTKLNVSL 690
           CVL C+  I+  II+ + L  L VSL
Sbjct: 158 CVLSCWTNIYYIIILAWALFYLLVSL 183


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.4 bits (43), Expect = 8.9
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = +2

Query: 137 LETSLV*EVTERDLHLI 187
           LE     +VTERD HL+
Sbjct: 119 LEPDFTSDVTERDNHLV 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 184,278
Number of Sequences: 438
Number of extensions: 3978
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22413960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)