Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1392
         (729 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00006CF375 Cluster: PAS domain S-box family protein;...    36   1.3  
UniRef50_A5BV63 Cluster: Putative uncharacterized protein; n=1; ...    33   5.4  
UniRef50_P26911 Cluster: Cytochrome P450-SOY; n=11; Actinomyceta...    33   5.4  
UniRef50_A5BWG8 Cluster: Putative uncharacterized protein; n=5; ...    33   7.2  

>UniRef50_UPI00006CF375 Cluster: PAS domain S-box family protein;
           n=1; Tetrahymena thermophila SB210|Rep: PAS domain S-box
           family protein - Tetrahymena thermophila SB210
          Length = 1577

 Score = 35.5 bits (78), Expect = 1.3
 Identities = 18/59 (30%), Positives = 34/59 (57%), Gaps = 2/59 (3%)
 Frame = -3

Query: 370 EGLYGLSDIICL--YLTCYKVSEFFTLITFSKTNEVNTFGIYVPTRFHYCIFLKFTISL 200
           EG+YG + IICL  YL C   + FF+L  +SK+  +  F + + +   + +++ F  ++
Sbjct: 211 EGVYGKAFIICLGIYLICMVSNRFFSLPYYSKS--IQNFTLIIDSSLLWIVWISFVCAI 267


>UniRef50_A5BV63 Cluster: Putative uncharacterized protein; n=1;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 673

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = -3

Query: 712 CAHTGMYHHPVYFCRETVMRFGLSFVGFSVLKNSKWTLKLVG 587
           CA T +  H +  C + ++R G SF   +  +N+ +T+ LVG
Sbjct: 142 CAKTEVMSHDLSLCPQPIIRSGHSFPNANEFRNALYTMSLVG 183


>UniRef50_P26911 Cluster: Cytochrome P450-SOY; n=11;
           Actinomycetales|Rep: Cytochrome P450-SOY - Streptomyces
           griseus
          Length = 412

 Score = 33.5 bits (73), Expect = 5.4
 Identities = 16/41 (39%), Positives = 22/41 (53%)
 Frame = +2

Query: 425 LISEFCCPSTKRVSCLLYGLPHLFIFIYAKRSERALGPPGA 547
           L+S F  P    V C L G+P+     + +RS+R L  PGA
Sbjct: 153 LVSAFALPVPSMVICALLGVPYADHAFFEERSQRLLRGPGA 193


>UniRef50_A5BWG8 Cluster: Putative uncharacterized protein; n=5;
           Vitis vinifera|Rep: Putative uncharacterized protein -
           Vitis vinifera (Grape)
          Length = 755

 Score = 33.1 bits (72), Expect = 7.2
 Identities = 14/42 (33%), Positives = 23/42 (54%)
 Frame = -3

Query: 712 CAHTGMYHHPVYFCRETVMRFGLSFVGFSVLKNSKWTLKLVG 587
           CA T +  H +  C + ++R G SF      +N+ +T+ LVG
Sbjct: 151 CAETEVMPHDLSLCPQPIIRSGHSFPNADEFRNALYTMSLVG 192


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 671,988,433
Number of Sequences: 1657284
Number of extensions: 12923913
Number of successful extensions: 25117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 24439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 25114
length of database: 575,637,011
effective HSP length: 99
effective length of database: 411,565,895
effective search space used: 58853922985
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)