Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1392
         (729 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BT011439-1|AAR99097.1|  722|Drosophila melanogaster RE60277p pro...    29   6.5  
AY075580-1|AAL68385.1|  451|Drosophila melanogaster SD07362p pro...    29   6.5  
AE013599-994|AAF58858.1|  722|Drosophila melanogaster CG18445-PA...    29   6.5  

>BT011439-1|AAR99097.1|  722|Drosophila melanogaster RE60277p
           protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 694 YHHPVYFCRETVMRFGLSFVGFSVLKNSKWTLKLVGDINVIEF 566
           Y+H            GL F G+    NSKW   L+ +INV+ F
Sbjct: 295 YYHAWLLADAICNNSGLGFTGYDKDGNSKW--DLISNINVLSF 335


>AY075580-1|AAL68385.1|  451|Drosophila melanogaster SD07362p
           protein.
          Length = 451

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 694 YHHPVYFCRETVMRFGLSFVGFSVLKNSKWTLKLVGDINVIEF 566
           Y+H            GL F G+    NSKW   L+ +INV+ F
Sbjct: 24  YYHAWLLADAICNNSGLGFTGYDKDGNSKW--DLISNINVLSF 64


>AE013599-994|AAF58858.1|  722|Drosophila melanogaster CG18445-PA
           protein.
          Length = 722

 Score = 29.1 bits (62), Expect = 6.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -3

Query: 694 YHHPVYFCRETVMRFGLSFVGFSVLKNSKWTLKLVGDINVIEF 566
           Y+H            GL F G+    NSKW   L+ +INV+ F
Sbjct: 295 YYHAWLLADAICNNSGLGFTGYDKDGNSKW--DLISNINVLSF 335


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,855,953
Number of Sequences: 53049
Number of extensions: 582233
Number of successful extensions: 1054
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1039
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1054
length of database: 24,988,368
effective HSP length: 83
effective length of database: 20,585,301
effective search space used: 3273062859
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)