Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1392
         (729 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical pr...    30   1.9  
Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical pr...    29   4.5  
M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein ( C.ele...    29   4.5  
Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical pr...    28   7.9  
U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcript...    28   7.9  

>Z81015-2|CAB02660.1|  411|Caenorhabditis elegans Hypothetical
           protein C11E4.3 protein.
          Length = 411

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/55 (32%), Positives = 32/55 (58%), Gaps = 5/55 (9%)
 Frame = -1

Query: 480 PYNKQLTRL--VLGQQNSDI---SYLFKLIFIWNSIKLNSVKKVCMDSQILFVCI 331
           PY K +T+L    G    D+   +YL K+ ++WNS ++N  ++VC    + +VC+
Sbjct: 334 PYLKSITKLPPTTGVCKPDVIADNYLDKIQYVWNSAEVN--EEVCFRFYV-YVCV 385


>Z14092-9|CAA78474.1| 1429|Caenorhabditis elegans Hypothetical
           protein R107.8 protein.
          Length = 1429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 713 VCPHGYVPPPCLFLPRNSNAFRF 645
           VCP G++PP CL  P N++   F
Sbjct: 179 VCPQGFLPPDCL-KPGNTSTVEF 200


>M12069-1|AAA70191.1| 1429|Caenorhabditis elegans protein (
           C.elegans homeotic lin-12 protein gene, complete cds. ).
          Length = 1429

 Score = 28.7 bits (61), Expect = 4.5
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -2

Query: 713 VCPHGYVPPPCLFLPRNSNAFRF 645
           VCP G++PP CL  P N++   F
Sbjct: 179 VCPQGFLPPDCL-KPGNTSTVEF 200


>Z70211-4|CAA94159.1|  825|Caenorhabditis elegans Hypothetical
           protein K11E4.4 protein.
          Length = 825

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 13/38 (34%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
 Frame = +3

Query: 585 SPTNLRVHFEF--LRTEKPTKDKPKRITVSRQK*TGWW 692
           SP + R  F+F     ++ + DK   IT+++Q+  GWW
Sbjct: 186 SPLSARAKFQFEGSNNDELSFDKDDIITITQQQEGGWW 223


>U29536-2|AAA68790.1|  759|Caenorhabditis elegans Brf (transcription
           factor) homologprotein 1 protein.
          Length = 759

 Score = 27.9 bits (59), Expect = 7.9
 Identities = 9/30 (30%), Positives = 17/30 (56%)
 Frame = -3

Query: 343 ICLYLTCYKVSEFFTLITFSKTNEVNTFGI 254
           +C+Y+TC   +    L+ FS   ++N F +
Sbjct: 129 VCMYITCRLENTAHLLLDFSDVTQINVFDL 158


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,001,538
Number of Sequences: 27780
Number of extensions: 332411
Number of successful extensions: 741
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 741
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1718929214
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)