Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1391
         (763 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggeri...    25   0.87 
DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          21   8.1  
AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.         21   8.1  

>EF222294-1|ABN79654.1|  451|Tribolium castaneum ecdysis triggering
           hormone receptorisoform B protein.
          Length = 451

 Score = 24.6 bits (51), Expect = 0.87
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +2

Query: 659 DGLISIICQSVSADTLTCTIENGGML 736
           DG I  +C S+  DTL C    G +L
Sbjct: 218 DGSIVFVCFSLVEDTLPCVFFLGSIL 243


>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = -1

Query: 370 EPCEKFILATFIPVSIIFSSTATLRDAGPIVQII 269
           +P +  +  T++PV  I  S    +D  P++ +I
Sbjct: 468 QPYDSLLWHTWMPVMRICVSAWNPKDCDPLITLI 501


>AY531877-1|AAT08872.1|  247|Tribolium castaneum ORF1p protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 8.1
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +1

Query: 10  ALSRRGIQFFTRKGSSRSRKPPVSRNRELTDKYLHYNP 123
           +L R+  Q   R   SRS++ P +   + T +  +Y P
Sbjct: 198 SLPRQYSQSRGRHNQSRSKRQPKTGREDQTRRNPYYRP 235


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,427
Number of Sequences: 336
Number of extensions: 3539
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 56
effective length of database: 103,769
effective search space used: 20442493
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)