Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1391
         (763 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|ch...    97   3e-21
SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting...    29   0.55 
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    29   0.96 
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   2.2  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    27   3.9  
SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated prote...    26   5.1  
SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces ...    26   5.1  
SPBC25B2.07c |mug164||microtubule-associated protein|Schizosacch...    26   5.1  
SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces pombe...    26   6.7  
SPBC16G5.15c |fkh2||fork head transcription factor Fkh2 |Schizos...    25   8.9  
SPAC18G6.05c |||translation elongation regulator Gcn1 |Schizosac...    25   8.9  

>SPAC4H3.10c |pyk1||pyruvate kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 509

 Score = 96.7 bits (230), Expect = 3e-21
 Identities = 50/86 (58%), Positives = 57/86 (66%)
 Frame = +3

Query: 252 VIRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSA 431
           V R + IICTIGP S NV  L K+ + GMN+ RMNFSHGS+EYH   I N R+A  +   
Sbjct: 24  VNRRTSIICTIGPKSNNVETLCKLRDAGMNIVRMNFSHGSYEYHQSVIDNARKASAT--- 80

Query: 432 KLGSPFSLAIALDTKGPEIRTGLLEG 509
                F LAIALDTKGPEIRTGL  G
Sbjct: 81  --NPLFPLAIALDTKGPEIRTGLTVG 104



 Score = 63.7 bits (148), Expect = 3e-11
 Identities = 30/86 (34%), Positives = 46/86 (53%), Gaps = 2/86 (2%)
 Frame = +2

Query: 512 GSAEVELKKGETIKLTSSD-YQEKGNADTIYVDYKNITNVVKPGNRIFIDDGLISI-ICQ 685
           G  +  +  G  +  T+ D Y EK N   +Y+DYKNIT V++PG  I++DDG++S  + +
Sbjct: 104 GGTDYPISSGHEMIFTTDDAYAEKCNDKVMYIDYKNITKVIQPGRIIYVDDGILSFTVIE 163

Query: 686 SVSADTLTCTIENGGMLGSGKASTCP 763
            V    L   + N G + S K    P
Sbjct: 164 KVDDKNLKVRVNNNGKISSKKGVNLP 189


>SPAC19G12.01c |cut20|lid1, apc4, SPAPJ698.04c|anaphase-promoting
           complex subunit Apc4|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 719

 Score = 29.5 bits (63), Expect = 0.55
 Identities = 15/43 (34%), Positives = 24/43 (55%)
 Frame = -3

Query: 308 SYITGCRSNSTDYSGETDYEDLESMSRPHICWSWEPTLATVGF 180
           +++  CRSNS     + D+ DLE+     +CW+ +  L  VGF
Sbjct: 49  NHLICCRSNSQRI-WDVDFHDLEATE---LCWNHDGNLIVVGF 87


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = -1

Query: 508 PSKSPVLISGPLVSNAMAKEKGEPSLAL*LFSASRQLRMVSAWYSWEPCEKFILATFIPV 329
           PS+ P + + P     +     EPS+   L      LR  +   + +P  K  L T IP 
Sbjct: 434 PSRQPTVRATPSTGKQIEPPNDEPSIGNELLPLFESLRFENRKTTSKPKAKKTLVTSIPT 493

Query: 328 SIIFSSTATLRDAGPIVQI--IPERRITK 248
               +S   + D    + +  IPE+ I++
Sbjct: 494 KPHQASVEKVYDLNSKINLKNIPEQSISR 522


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 718 NGTRKSVSADRLTDDRDEAIIDEDSVSWLHDIR 620
           N TRKS+S  + TD      + +D  SWL  +R
Sbjct: 576 NKTRKSISHSKNTDKHVGNELPQDIPSWLRSLR 608


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 26.6 bits (56), Expect = 3.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +1

Query: 592 YNLRGLQEHNECREARKPNLHR*W 663
           ++LRG   H  C EA+ PN+   W
Sbjct: 89  HDLRGSHLHTVCEEAKCPNIGECW 112


>SPBC31E1.01c |atg2|mug36, SPBC660.18c|autophagy associated protein
            Mug36|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1646

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 14/65 (21%), Positives = 29/65 (44%)
 Frame = +3

Query: 282  IGPASRNVAVLEKMMETGMNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI 461
            I P ++ +     ++++   V R+N +H S    ++   +      SY  +LG   S  I
Sbjct: 1194 ISPEAKTLLFQSIVIKSFSKVGRLNINHVSEPIDSDEFADYLSKSISYHLRLGKSKSKKI 1253

Query: 462  ALDTK 476
             ++ K
Sbjct: 1254 GIEIK 1258


>SPCC962.01 ||SPCP31B10.09|C2 domain protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1429

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 16/62 (25%), Positives = 28/62 (45%)
 Frame = +2

Query: 542  ETIKLTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDGLISIICQSVSADTLTCTIE 721
            +TI L + DY+E GN  ++     N+   ++   R+     L S +  +   + LT T  
Sbjct: 819  KTIDLEAMDYEESGNDRSLGYASINVQKYIRNAKRL-DRSALASTVFGTSEVNALTLTSR 877

Query: 722  NG 727
             G
Sbjct: 878  KG 879


>SPBC25B2.07c |mug164||microtubule-associated
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 17/53 (32%), Positives = 27/53 (50%)
 Frame = +2

Query: 539 GETIKLTSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDGLISIICQSVSA 697
           G   K ++S  + K NA T  V   +    V+PG+RIF ++   +    +VSA
Sbjct: 259 GSISKNSTSPSKVKVNASTKIVRPVSAAQTVRPGSRIFRENSASNTQRPNVSA 311


>SPAC1296.05c |||cyclin L family cyclin|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 258

 Score = 25.8 bits (54), Expect = 6.7
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -1

Query: 637 WLHDIRYVLVVHVNCISIAFLLIIRTCQLY 548
           W+ +   +L +  NC+ +  +L  R C LY
Sbjct: 34  WIQEAGVLLNLTQNCVIVCLILFRRYCTLY 63


>SPBC16G5.15c |fkh2||fork head transcription factor Fkh2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 642

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 5/45 (11%)
 Frame = +2

Query: 485 DQNWTL---GRGG-SAEVEL-KKGETIKLTSSDYQEKGNADTIYV 604
           DQ W     GR G   + +L K GET+KLTS    E      ++V
Sbjct: 140 DQTWNCSVYGRNGIKVDGKLFKNGETVKLTSGSILEVAGLQMMFV 184


>SPAC18G6.05c |||translation elongation regulator Gcn1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2670

 Score = 25.4 bits (53), Expect = 8.9
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 354 NFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEIRTGLLEGAAQ 518
           +F +G    +AE  RNC +  K  SA      SL+         +RTG +  + Q
Sbjct: 323 SFVNGLKSSNAEVRRNCFQTFKDLSANASDNESLSRVASELITSLRTGKVTASDQ 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,020,954
Number of Sequences: 5004
Number of extensions: 60209
Number of successful extensions: 199
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 365309308
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)