Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1391
         (763 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)                     67   1e-11
SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)               31   1.0  
SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   3.1  
SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)                29   4.1  
SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)                     28   7.2  
SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)                       28   7.2  
SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)                   28   7.2  
SB_46551| Best HMM Match : PH (HMM E-Value=2e-10)                      28   9.5  
SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   9.5  

>SB_1468| Best HMM Match : PK (HMM E-Value=2.2e-19)
          Length = 211

 Score = 67.3 bits (157), Expect = 1e-11
 Identities = 26/41 (63%), Positives = 37/41 (90%)
 Frame = +3

Query: 255 IRLSGIICTIGPASRNVAVLEKMMETGMNVARMNFSHGSHE 377
           IR SG++CTIGPASR+V ++ +++E GMN+AR+NFSHG+HE
Sbjct: 45  IRNSGVVCTIGPASRSVEIVAQLIENGMNIARLNFSHGTHE 85



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 30/82 (36%), Positives = 49/82 (59%), Gaps = 1/82 (1%)
 Frame = +2

Query: 521 EVELKKGETIKL-TSSDYQEKGNADTIYVDYKNITNVVKPGNRIFIDDGLISIICQSVSA 697
           E++L+KG+ +K+ T     ++GN + I+VDY+NI  VV+ G  +++DDGLIS+       
Sbjct: 87  EIKLEKGQKLKVSTDKAMYDQGNTECIFVDYENIVKVVQIGGTVYVDDGLISLKVLEKGD 146

Query: 698 DTLTCTIENGGMLGSGKASTCP 763
           + L   + N  +LGS K    P
Sbjct: 147 NFLITEVLNDALLGSKKGVNLP 168


>SB_56313| Best HMM Match : zf-C2H2 (HMM E-Value=2.3e-14)
          Length = 910

 Score = 31.1 bits (67), Expect = 1.0
 Identities = 15/51 (29%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 485 DQNWTLGRGGSAEVELKKGETIKLTSSDYQEKGNAD-TIYVDYKNITNVVK 634
           D      + G+  +EL K E + L+  DY ++     TIY D++N+T  ++
Sbjct: 254 DHQLLCSQHGAQRIELPKEENMFLSYKDYHKQLRVPFTIYADFENLTTKIQ 304


>SB_3733| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1755

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 16/62 (25%), Positives = 31/62 (50%)
 Frame = +2

Query: 395  SQLSRGREELQR*TRFTLLFGHRIGH*RT*DQNWTLGRGGSAEVELKKGETIKLTSSDYQ 574
            S + + R+  +R  +  L    ++    T  Q+ + G+GG+ E  +K+ E ++    DYQ
Sbjct: 1234 SMVEQDRQRAERMEKLALEHEKKVQQLETELQSKSSGQGGANEAIIKEMEQLRQEQQDYQ 1293

Query: 575  EK 580
             K
Sbjct: 1294 HK 1295


>SB_21262| Best HMM Match : IL1_propep (HMM E-Value=9.4)
          Length = 306

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 17/61 (27%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
 Frame = +1

Query: 37  FTRKGSSRSRKPPVSRNRE-LTDKYLHYNPLKMVYPTIHDGEIEAGAVEKPTVANVGSQL 213
           FT+  + +  +P    N E L +K + YN L    P +  G       +K  ++ VGS+ 
Sbjct: 68  FTKVETLKRSQPTKDVNTESLVNKLMGYNQLNKSLPALRHGNTYEPVAKKKYISTVGSKH 127

Query: 214 Q 216
           Q
Sbjct: 128 Q 128


>SB_14299| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 263

 Score = 29.1 bits (62), Expect = 4.1
 Identities = 21/79 (26%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
 Frame = +3

Query: 297 RNVAVLEKMMETG--MNVARMNFSHGSHEYHAETIRNCREAEKSYSAKLGSPFSLAI-AL 467
           RN A LE+    G  + +AR NF     E  A+T + C E   + ++++       + AL
Sbjct: 155 RNEAALEREQAVGDALAIARKNFERRRKEVIAQTRQQCEEEAATEASRVARLHQQEVGAL 214

Query: 468 DTKGPEIRTGLLEGAAQLK 524
           D +  +++  L    A  K
Sbjct: 215 DQRIDDLKNMLASERAAAK 233


>SB_44208| Best HMM Match : DHHA2 (HMM E-Value=8.3)
          Length = 289

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 375 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 488
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 4   ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 41


>SB_47118| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 408

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 375 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 488
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 287 ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 324


>SB_18036| Best HMM Match : DUF29 (HMM E-Value=8)
          Length = 125

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = +3

Query: 375 EYHAETIRNCREAEKSYSAKLGSPFSLAIALDTKGPEI 488
           E HA+   +   A+KSY   L S  +LA  LD   P++
Sbjct: 84  ELHADKKESLERAQKSYEKLLASTSNLADVLDEDMPDL 121


>SB_8293| Best HMM Match : zf-C2H2 (HMM E-Value=0.32)
          Length = 316

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 14/51 (27%), Positives = 27/51 (52%), Gaps = 1/51 (1%)
 Frame = +2

Query: 485 DQNWTLGRGGSAEVELKKGETIKLTSSDYQEKGNAD-TIYVDYKNITNVVK 634
           D      + G+  +EL K E + L+  DY ++     TIY D++++T  ++
Sbjct: 186 DHQLLCSQHGAQRIELPKEENMFLSFRDYHKQLRLPFTIYADFESLTTKIQ 236


>SB_46551| Best HMM Match : PH (HMM E-Value=2e-10)
          Length = 310

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 16/47 (34%), Positives = 26/47 (55%)
 Frame = -1

Query: 763 RAG*RLSGSEHTSVFNGTRKSVSADRLTDDRDEAIIDEDSVSWLHDI 623
           R+   +SGS  T+  N T    S +    DR+  +I++DSVS  +D+
Sbjct: 263 RSNSMMSGS--TNSVNTTSSVKSREEKAADRESGVIEDDSVSGDYDV 307


>SB_4541| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 146

 Score = 27.9 bits (59), Expect = 9.5
 Identities = 13/23 (56%), Positives = 15/23 (65%)
 Frame = +3

Query: 375 EYHAETIRNCREAEKSYSAKLGS 443
           E+H E IR  +EA KSY  K GS
Sbjct: 119 EHHEEAIRRHKEALKSYEKKDGS 141


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,329,802
Number of Sequences: 59808
Number of extensions: 492035
Number of successful extensions: 1307
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1306
length of database: 16,821,457
effective HSP length: 80
effective length of database: 12,036,817
effective search space used: 2082369341
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)