Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1391
         (763 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II lar...    23   3.1  
EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage prot...    23   4.1  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   7.1  

>DQ069332-1|AAZ32217.1|  296|Apis mellifera RNA polymerase II large
           subunit protein.
          Length = 296

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/31 (29%), Positives = 16/31 (51%)
 Frame = +1

Query: 145 IHDGEIEAGAVEKPTVANVGSQLQHMCGLDI 237
           +  GE+  G + K T+      L H+C L++
Sbjct: 91  VEHGELVMGILCKKTLGTSAGSLLHICMLEL 121


>EF625899-1|ABR45906.1| 1010|Apis mellifera high Glx storage protein
           protein.
          Length = 1010

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = -3

Query: 287 SNSTDYSGETDYEDLESMSRPHI 219
           SN      + DYE+++S+ +PH+
Sbjct: 293 SNGLGPIKDIDYENVQSLYQPHL 315


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 7.1
 Identities = 13/30 (43%), Positives = 15/30 (50%)
 Frame = -1

Query: 679 DDRDEAIIDEDSVSWLHDIRYVLVVHVNCI 590
           DD  +AIID D  S   +I   L V   CI
Sbjct: 71  DDLIKAIIDSDRHSTTREIAEKLHVSHTCI 100


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 202,911
Number of Sequences: 438
Number of extensions: 4378
Number of successful extensions: 6
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)