Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1389X
         (460 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q8WS93 Cluster: KAL-1; n=1; Bombyx mori|Rep: KAL-1 - Bo...   135   5e-31
UniRef50_Q03IY1 Cluster: Abortive infection bacteriophage resist...    33   3.9  
UniRef50_A6LME7 Cluster: Cation diffusion facilitator family tra...    31   9.0  
UniRef50_Q4YYI6 Cluster: Ubiquitin-like protein, putative; n=3; ...    31   9.0  

>UniRef50_Q8WS93 Cluster: KAL-1; n=1; Bombyx mori|Rep: KAL-1 -
           Bombyx mori (Silk moth)
          Length = 472

 Score =  135 bits (326), Expect = 5e-31
 Identities = 62/68 (91%), Positives = 64/68 (94%)
 Frame = -1

Query: 460 TDKPM*DFAATTAQSTFELSELDYHCSYKVNVNRSWKNQIPESELVITIPGCQYFQRKVN 281
           TDKPM D AATTAQSTFEL ELDYHCSYKVNVNRSWKN+IPESELVITIP CQYF+RKVN
Sbjct: 405 TDKPMKDLAATTAQSTFELYELDYHCSYKVNVNRSWKNKIPESELVITIPRCQYFKRKVN 464

Query: 280 VTAITCDS 257
           VTAITCDS
Sbjct: 465 VTAITCDS 472


>UniRef50_Q03IY1 Cluster: Abortive infection bacteriophage
           resistance protein; n=1; Streptococcus thermophilus
           LMD-9|Rep: Abortive infection bacteriophage resistance
           protein - Streptococcus thermophilus (strain ATCC
           BAA-491 / LMD-9)
          Length = 326

 Score = 32.7 bits (71), Expect = 3.9
 Identities = 21/64 (32%), Positives = 37/64 (57%), Gaps = 2/64 (3%)
 Frame = +2

Query: 119 NSNRSKFQNNLSMISIHLMSKLLSRISTI--NTSYKCXYYNKKTKFEIRVTRYGCNINFS 292
           +++R+K  N+LSM+S + + +     + I  N + K   Y + TKFEI ++RY  + N  
Sbjct: 27  DASRNKAINSLSMVSYYKIKEFAKPFAKITKNGTQKIIDY-QNTKFEIVISRYYQDKNLR 85

Query: 293 LKIL 304
           L +L
Sbjct: 86  LNLL 89


>UniRef50_A6LME7 Cluster: Cation diffusion facilitator family
           transporter; n=1; Thermosipho melanesiensis BI429|Rep:
           Cation diffusion facilitator family transporter -
           Thermosipho melanesiensis BI429
          Length = 294

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 17/43 (39%), Positives = 25/43 (58%)
 Frame = +2

Query: 107 AILLNSNRSKFQNNLSMISIHLMSKLLSRISTINTSYKCXYYN 235
           AILL+S+ SK   NL    +H++S + S +  I T +   YYN
Sbjct: 133 AILLSSH-SKENLNLKSAFLHILSDMFSSVGIIITGHVMSYYN 174


>UniRef50_Q4YYI6 Cluster: Ubiquitin-like protein, putative; n=3;
           Plasmodium (Vinckeia)|Rep: Ubiquitin-like protein,
           putative - Plasmodium berghei
          Length = 1370

 Score = 31.5 bits (68), Expect = 9.0
 Identities = 22/63 (34%), Positives = 34/63 (53%), Gaps = 1/63 (1%)
 Frame = +2

Query: 20  SRIKSFYNNDSVYIYLLG*LRKQS*SHFVAILLNSNRSKFQNN-LSMISIHLMSKLLSRI 196
           S I S+YN +S+Y++    L     +   +I++  N S F NN +SM S   +S +LS  
Sbjct: 785 SYINSYYNTNSIYVFFN--LFVHINNIINSIIIQFNHSNFLNNDISMSSFSRISIILSLA 842

Query: 197 STI 205
           S I
Sbjct: 843 SVI 845


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 360,234,557
Number of Sequences: 1657284
Number of extensions: 6027161
Number of successful extensions: 14439
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 14086
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14434
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 24351434270
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)