Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1389X
         (460 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomy...    27   1.8  
SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces po...    26   3.2  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    26   3.2  
SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharo...    25   4.2  

>SPAC13C5.02 |dre4||DNA replication protein Dre4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 411

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 11/34 (32%), Positives = 21/34 (61%)
 Frame = -3

Query: 365 EQILEESNTRIRARYNNSWMSVFSKKS*CYSHNV 264
           +Q+ +    + R   N+SW+ VF+KK+  + HN+
Sbjct: 77  KQLPDRPKFKKRIPNNDSWVVVFTKKNRYFFHNL 110


>SPAC2F7.02c |||phosphoprotein phosphatase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1

Query: 391 YHCSYKVNVNRSWKNQIPESELVITIPGCQYFQRKVNVTAI 269
           +H S+ V ++ SW N + + EL+  IP  ++  R  +V+ +
Sbjct: 281 FHPSHAVPIS-SWFNDMHDMELIDLIPFLEHLARVPDVSTV 320


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.8 bits (54), Expect = 3.2
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = +1

Query: 286  LFFENTDIQELL*RALILVFDSSRICSHLL 375
            +F+E+T IQ+LL       F+SS+   HL+
Sbjct: 1548 IFYESTYIQQLLPELAASFFNSSKTYMHLV 1577


>SPAC22G7.06c |ura1||carbamoyl-phosphate synthase |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2244

 Score = 25.4 bits (53), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -1

Query: 397  LDY-HCSYKVNVNRSWKNQIPESELVITIPGCQYF 296
            LD+ HC Y  +V  S  N++  SEL  +  GC +F
Sbjct: 1597 LDHAHCDYNFSVIASSTNEVTISELT-SESGCLFF 1630


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,583,008
Number of Sequences: 5004
Number of extensions: 27249
Number of successful extensions: 55
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 172312850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)