Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1389X
         (460 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0060 - 19695338-19695477,19695641-19695734,19695818-196959...    29   1.8  
12_01_0329 + 2545511-2546683,2546983-2546993,2547377-2547438,254...    27   5.5  

>11_06_0060 -
           19695338-19695477,19695641-19695734,19695818-19695973,
           19696109-19696168,19696384-19696602,19696607-19697036,
           19698428-19698747
          Length = 472

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 13/38 (34%), Positives = 21/38 (55%)
 Frame = -1

Query: 418 STFELSELDYHCSYKVNVNRSWKNQIPESELVITIPGC 305
           S F + +LD  C   +  +  +  Q+ + ELVI +PGC
Sbjct: 391 SMFVMVKLDLSCLQGIKDDMDFCCQLAKEELVILLPGC 428


>12_01_0329 +
           2545511-2546683,2546983-2546993,2547377-2547438,
           2547882-2548225
          Length = 529

 Score = 27.5 bits (58), Expect = 5.5
 Identities = 15/44 (34%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
 Frame = -1

Query: 436 AATTAQSTFELSELD-YHCSYKVNVNRSWKNQIPESELVITIPG 308
           A   A+ T   S  D   C YKVN++   KN   ES++++ + G
Sbjct: 469 AHCNARRTHTSSHTDGVQCCYKVNMSDQTKNPNLESKIILPVVG 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,854,053
Number of Sequences: 37544
Number of extensions: 133169
Number of successful extensions: 282
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 280
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 907440304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)