Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1389X
         (460 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_21787| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-37)                 29   2.4  
SB_17166| Best HMM Match : VWA (HMM E-Value=4.9e-30)                   29   2.4  
SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)                    29   2.4  
SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)                 28   4.3  
SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.3  
SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   5.6  
SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)           27   7.5  
SB_32457| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.9  

>SB_21787| Best HMM Match : 7tm_1 (HMM E-Value=8.8e-37)
          Length = 395

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +3

Query: 39  IIMIPYTFIYLVSYENSLNLILLQFYSIQIDLSFKITCL 155
           I   PY   +++ Y N L+  L +++ I     F ITCL
Sbjct: 321 ICYFPYQLFFILEYFNVLSFGLWEYFHITRKYIFLITCL 359


>SB_17166| Best HMM Match : VWA (HMM E-Value=4.9e-30)
          Length = 295

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/56 (32%), Positives = 27/56 (48%)
 Frame = +2

Query: 104 VAILLNSNRSKFQNNLSMISIHLMSKLLSRISTINTSYKCXYYNKKTKFEIRVTRY 271
           VA LL+++ S  + N  +    L+   ++     NTSY    Y+K  K E   TRY
Sbjct: 130 VAFLLDTSTSVRRRNFELAKRALIE--ITDRGMKNTSYAAITYSKYAKLEFNFTRY 183


>SB_6138| Best HMM Match : 7tm_1 (HMM E-Value=2e-19)
          Length = 494

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 18/62 (29%), Positives = 33/62 (53%)
 Frame = +3

Query: 45  MIPYTFIYLVSYENSLNLILLQFYSIQIDLSFKITCL*YLYI*CQSY*VELVLLIHLINV 224
           ++PY +I +  Y     +++ +F+SI I L    T L Y YI    Y   ++ + H I+V
Sbjct: 355 VLPYRYIEVPLY---CRIVISRFHSIAISLYRGSTVLPYRYIEVPVYCHIVISMFHCIDV 411

Query: 225 TI 230
           ++
Sbjct: 412 SL 413


>SB_33554| Best HMM Match : Sushi (HMM E-Value=0.00055)
          Length = 685

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 14/59 (23%), Positives = 27/59 (45%)
 Frame = +2

Query: 98  HFVAILLNSNRSKFQNNLSMISIHLMSKLLSRISTINTSYKCXYYNKKTKFEIRVTRYG 274
           H  A    + R  + + ++ I++H    + +R  T   + KC Y +  T+  +   RYG
Sbjct: 349 HLHAARTQTRRCTYTHPVTQINVHAPRHVNARTRT--QTLKCTYTHPDTQIHVHAPRYG 405


>SB_13201| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 383

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 13/32 (40%), Positives = 18/32 (56%)
 Frame = -1

Query: 427 TAQSTFELSELDYHCSYKVNVNRSWKNQIPES 332
           TA+S F +++ +  CS   N N  W N IP S
Sbjct: 72  TAESVF-INDNESQCSKMSNTNAYWDNYIPRS 102


>SB_28918| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 319

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 16/45 (35%), Positives = 27/45 (60%), Gaps = 4/45 (8%)
 Frame = +2

Query: 326 EL*FWYLILPG---SVHIYFIAAVVIQFR-EFKRRLRCGRREVLH 448
           E+  +Y ++ G   +++++   A+   FR EFK  LRC RR V+H
Sbjct: 258 EVFVFYSVMGGVSSAINVFIYHAMNSAFRAEFKAILRCSRRIVVH 302


>SB_7978| Best HMM Match : F5_F8_type_C (HMM E-Value=1.2e-22)
          Length = 1151

 Score = 27.1 bits (57), Expect = 7.5
 Identities = 19/62 (30%), Positives = 27/62 (43%), Gaps = 4/62 (6%)
 Frame = -1

Query: 433 ATTAQSTFELSELDYHCSYKVNVN----RSWKNQIPESELVITIPGCQYFQRKVNVTAIT 266
           ATT   T   S    +CSY+ + +    + W+  IPES     I   +Y    + V   T
Sbjct: 617 ATTCPDTPTESRKMCNCSYREDCSLLEWQGWQGDIPESGCARQIRHREYNNSIIYVQRDT 676

Query: 265 CD 260
           CD
Sbjct: 677 CD 678


>SB_32457| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 80

 Score = 26.6 bits (56), Expect = 9.9
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -3

Query: 371 KCEQILEESNTRIRARYNNSWMSVFSKK 288
           KC + ++E+ T I A +++ W+  FSKK
Sbjct: 6   KCLREIKENTTAIFAGHSDIWVQRFSKK 33


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,198,801
Number of Sequences: 59808
Number of extensions: 185704
Number of successful extensions: 921
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 912
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 921
length of database: 16,821,457
effective HSP length: 76
effective length of database: 12,276,049
effective search space used: 932979724
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)