Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1389X
         (460 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical pr...    27   5.0  
Z83230-4|CAB05744.1|  275|Caenorhabditis elegans Hypothetical pr...    27   6.6  
Z81142-9|CAB03501.2|  370|Caenorhabditis elegans Hypothetical pr...    27   6.6  
AF016443-1|AAC24277.1|  366|Caenorhabditis elegans Hypothetical ...    27   6.6  
Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>Z93387-1|CAB07651.1|  376|Caenorhabditis elegans Hypothetical
           protein T02E9.1 protein.
          Length = 376

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 1/92 (1%)
 Frame = +2

Query: 149 LSMISIHLMSKLLSRISTINTSYKCXYYNKKTKFEIR-VTRYGCNINFSLKILTSRNCYN 325
           L+ +S+ L+S ++  +S   TS+K   Y    K E   V R  C    +L+     + + 
Sbjct: 149 LATLSLFLISPVV--LSARVTSFKSGQYFVSAKNERHEVIRQMCIDGMALEWKVWVSAF- 205

Query: 326 EL*FWYLILPGSVHIYFIAAVVIQFREFKRRL 421
            L F+  +LP ++  YF A +V++ R  +R +
Sbjct: 206 -LIFFAFLLPCTLLTYFYAKIVLRLRRQRRTM 236


>Z83230-4|CAB05744.1|  275|Caenorhabditis elegans Hypothetical
           protein F56A8.4 protein.
          Length = 275

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -2

Query: 453 NPCKTSRRPQRNLRLNSLNWITTAAIK 373
           NPC+   +    L +N  NW TT++++
Sbjct: 135 NPCRFELKELEVLLINQCNWFTTSSLE 161


>Z81142-9|CAB03501.2|  370|Caenorhabditis elegans Hypothetical
           protein ZK1037.1 protein.
          Length = 370

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 350 LPGSVHIYFIAAVVIQFREFKRRLRCGRREVL 445
           L GS+H+ F     ++F E    L CG RE L
Sbjct: 102 LVGSLHVSFTEYESLKFLESLETLECGDREFL 133


>AF016443-1|AAC24277.1|  366|Caenorhabditis elegans Hypothetical
           protein C17E7.5 protein.
          Length = 366

 Score = 27.1 bits (57), Expect = 6.6
 Identities = 11/34 (32%), Positives = 15/34 (44%)
 Frame = +2

Query: 128 RSKFQNNLSMISIHLMSKLLSRISTINTSYKCXY 229
           R  F NN  +++         RI  +N  YKC Y
Sbjct: 44  RPAFSNNYGVLTCDACKMFYRRIVILNREYKCKY 77


>Z81454-8|CAD60404.1|  330|Caenorhabditis elegans Hypothetical
           protein B0391.12 protein.
          Length = 330

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 18/72 (25%), Positives = 36/72 (50%), Gaps = 1/72 (1%)
 Frame = +3

Query: 81  ENSLNLILLQFYSIQIDLSFKITCL*YLYI*CQSY*VELVLL-IHLINVTIIIKKRNLKY 257
           ++S+ LI++   S  +   F  TC    Y  C  + + L +  IH +   ++++K  L +
Sbjct: 65  KDSVFLIIINLNSTFVP-EFVATCATVAY--CSLFGMSLAIFAIHFVYRHLVVEKSPLIF 121

Query: 258 ESHVMAVTLTFL 293
           ++HV  + L  L
Sbjct: 122 QNHVRKILLLIL 133


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,549,568
Number of Sequences: 27780
Number of extensions: 146590
Number of successful extensions: 398
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 395
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 398
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 820565746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)