Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1381X
(514 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC56F8.03 |||translation initiation factor IF2 |Schizosaccharo... 29 0.31
SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex sub... 29 0.54
SPAC17C9.03 |tif471||translation initiation factor eIF4G |Schizo... 28 0.94
SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|c... 28 0.94
SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 1.2
SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain pro... 27 1.2
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ... 27 1.6
SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces... 27 1.6
SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomy... 27 2.2
SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr 1|||Ma... 26 3.8
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po... 25 5.0
SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 25 6.7
SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyce... 25 6.7
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p... 25 8.8
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom... 25 8.8
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom... 25 8.8
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac... 25 8.8
>SPAC56F8.03 |||translation initiation factor IF2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1079
Score = 29.5 bits (63), Expect = 0.31
Identities = 14/63 (22%), Positives = 36/63 (57%)
Frame = +3
Query: 12 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHER 191
L+KM+E R EE+ +++R + + + E + E +++A ++ +++E+ + E
Sbjct: 250 LQKMLEEKRAREEEEQRIRE-EEARIAEEEKRLAE-VEEARKEEARLKKKEKERKKKEEM 307
Query: 192 RAE 200
+A+
Sbjct: 308 KAQ 310
>SPBC29A10.03c |rlf2|SPBC365.19c|chromatin remodeling complex
subunit Rlf2 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 544
Score = 28.7 bits (61), Expect = 0.54
Identities = 15/73 (20%), Positives = 37/73 (50%)
Frame = +3
Query: 15 KKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERR 194
+K +++ R EE++R+ A ++ ++ + QEK + ++ + ++ EKL R
Sbjct: 77 EKKLQKQRAQEERIRQKEAERLKREKERQQREQEKKLREQEKIAAKKMKELEKLEKERIR 136
Query: 195 AELVRQNKSARTE 233
+ ++ K R +
Sbjct: 137 LQEQQRRKEERDQ 149
>SPAC17C9.03 |tif471||translation initiation factor eIF4G
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1403
Score = 27.9 bits (59), Expect = 0.94
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 2/73 (2%)
Frame = +3
Query: 15 KKMIERLREHEEQVRKVRAGN--QEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHE 188
K E R+ EE+ R N +E +Q + +EK ++ A+ + EAE++ K R E
Sbjct: 540 KAEAEAKRKAEEKARLEAEENAKREAEEQAKREAEEKAKREAEEKAKREAEEKAK-REAE 598
Query: 189 RRAELVRQNKSAR 227
A+ + K+ R
Sbjct: 599 ENAKREAEEKAKR 611
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/66 (27%), Positives = 34/66 (51%), Gaps = 2/66 (3%)
Frame = +3
Query: 36 REHEEQVRKV--RAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVR 209
RE EEQ ++ +E ++ + +EK ++ A+ EAE++ K R E +A+
Sbjct: 563 REAEEQAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAK-REAEEKAKREA 621
Query: 210 QNKSAR 227
+ K+ R
Sbjct: 622 EEKAKR 627
Score = 27.5 bits (58), Expect = 1.2
Identities = 17/77 (22%), Positives = 34/77 (44%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN 182
+EN K+ E + E + + R ++ ++ E EK ++ A+ + EAE++ K
Sbjct: 598 EENAKREAEEKAKREAEEKAKREAEEKAKREAE----EKAKREAEEKAKREAEEKAKREA 653
Query: 183 HERRAELVRQNKSARTE 233
E+ +N E
Sbjct: 654 EEKAKREAEENAKREAE 670
Score = 26.6 bits (56), Expect = 2.2
Identities = 19/70 (27%), Positives = 36/70 (51%), Gaps = 3/70 (4%)
Frame = +3
Query: 27 ERLREHEEQVRKVRAGNQEKFQQLESA---IQEKLQQAADRRLLIEAEQREKLRNHERRA 197
E+ + E+ K A + K + E+A +EK ++ A+ + EAE++ K R E +A
Sbjct: 575 EKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAEEKAKREAEEKAK-REAEEKA 633
Query: 198 ELVRQNKSAR 227
+ + K+ R
Sbjct: 634 KREAEEKAKR 643
Score = 25.0 bits (52), Expect = 6.7
Identities = 15/68 (22%), Positives = 30/68 (44%), Gaps = 2/68 (2%)
Frame = +3
Query: 36 REHEEQVRKV--RAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVR 209
RE EE+ ++ +E ++ + +EK ++ A+ + EAE+ K E+
Sbjct: 619 REAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEEKAKREAEENAKREAEEKAKREAE 678
Query: 210 QNKSARTE 233
+N E
Sbjct: 679 ENAKREAE 686
>SPAC890.02c |alp7|mia1|TACC homolog |Schizosaccharomyces pombe|chr
1|||Manual
Length = 474
Score = 27.9 bits (59), Expect = 0.94
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = +3
Query: 45 EEQVRKVRAGNQEKFQQLESAIQEK 119
EE+ R ++A NQ +QLE AIQE+
Sbjct: 374 EEERRALKADNQTLQKQLEKAIQER 398
>SPAC17G6.13 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 433
Score = 27.5 bits (58), Expect = 1.2
Identities = 18/64 (28%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRL---LIEAEQREK 173
D +L+ +E L + E +++ + + +E A QE LQQ R+ L E EQ +
Sbjct: 20 DHSLQMALEELNQQIEVIQRQEEQLALRKKAIEDARQEVLQQIQHRKFRQYLHEREQEAR 79
Query: 174 LRNH 185
L+ +
Sbjct: 80 LQEY 83
>SPAC17C9.11c |||zinc finger protein, zf-C2H2 type/UBA domain
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 240
Score = 27.5 bits (58), Expect = 1.2
Identities = 16/70 (22%), Positives = 36/70 (51%)
Frame = +3
Query: 18 KMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRA 197
K++++ + Q + + +Q + + L+ Q+K + A R+ ++ +R+K R R A
Sbjct: 76 KILQKSNDETAQAMR-KMQDQARLRDLQKIRQQKAEDAEQRKKILAEIERDKKR---RAA 131
Query: 198 ELVRQNKSAR 227
E +N S +
Sbjct: 132 ERENKNSSVK 141
>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
Length = 507
Score = 27.1 bits (57), Expect = 1.6
Identities = 22/64 (34%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Frame = +3
Query: 12 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIE-AEQREKLRNHE 188
+KK I+ + E+ + KV +E ++L+ I+E ++ +RR IE AEQR+ + NHE
Sbjct: 423 IKKPID-MEEYSKVSGKVFRPVEEMEKELQK-IRENFEE--ERRRAIEVAEQRQLIVNHE 478
Query: 189 RRAE 200
E
Sbjct: 479 LEQE 482
>SPAC1952.03 |||cysteine protease, OTU family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 324
Score = 27.1 bits (57), Expect = 1.6
Identities = 17/76 (22%), Positives = 34/76 (44%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN 182
+E L K E +E + ++ +R +E ++ + A+Q+K+ Q A +R+KL
Sbjct: 26 EELLSKQREECKELQSKITNLRKQLKEGNKKQKRALQQKISQMEADLSQKHATERQKLDK 85
Query: 183 HERRAELVRQNKSART 230
+ +Q T
Sbjct: 86 GDEETNETQQEDLLNT 101
>SPCC417.07c |mto1|mbo1, mod20|MT organizer Mto1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1115
Score = 26.6 bits (56), Expect = 2.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +3
Query: 153 EAEQREKLRNHERRAELVRQNKS 221
E +R+KL ER +L+RQN+S
Sbjct: 1069 EGRKRDKLGARERLQDLIRQNRS 1091
>SPAC1556.05c |||CGR1 family|Schizosaccharomyces pombe|chr
1|||Manual
Length = 111
Score = 25.8 bits (54), Expect = 3.8
Identities = 17/70 (24%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 15 KKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRL--LIEAEQREKLRNHE 188
K+ ++ ++E E+++++ + +E+ I+ + Q ADR L++A+ +K+ +
Sbjct: 42 KRKLDEIKEREKELKREK---EEQRAAHAEKIRTRRQAKADRERMELLQAKLHQKVIDRR 98
Query: 189 RRAELVRQNK 218
RR E ++NK
Sbjct: 99 RRRE--KRNK 106
>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 665
Score = 25.4 bits (53), Expect = 5.0
Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Frame = +3
Query: 39 EHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEA------EQREKLRNHERRAE 200
+HE + + N K + + S Q K A + L E+ +EK R+H++
Sbjct: 435 KHENNLNNIT--NSAKNEHIRSQRQHKTHAAPSKELTKESLSNDQLSVKEKRRHHKKAPT 492
Query: 201 LVRQNKSART 230
L++ S RT
Sbjct: 493 LIQNLNSPRT 502
>SPAC1751.04 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 123
Score = 25.0 bits (52), Expect = 6.7
Identities = 11/42 (26%), Positives = 23/42 (54%)
Frame = +3
Query: 93 QLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVRQNK 218
+L+ I+ KLQ A +R + + K+ N++ + R+N+
Sbjct: 80 ELDDKIKSKLQVAHEREAVFSKQSDRKISNNKADKKTGRKNE 121
>SPBC1347.03 |meu14||sporulation protein Meu14|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 335
Score = 25.0 bits (52), Expect = 6.7
Identities = 19/71 (26%), Positives = 32/71 (45%)
Frame = +3
Query: 21 MIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAE 200
++ L E E + K N+ KF+ + + A R+ LI + +RE+ R+
Sbjct: 96 LVSELGETEIEFVKAFNENRIKFKAIRAMEDSIAPSRAHRQRLISSIEREEERDPLSPKL 155
Query: 201 LVRQNKSARTE 233
QN+ RTE
Sbjct: 156 TDLQNQLVRTE 166
>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 480
Score = 24.6 bits (51), Expect = 8.8
Identities = 16/64 (25%), Positives = 29/64 (45%), Gaps = 1/64 (1%)
Frame = +3
Query: 39 EHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAE-QREKLRNHERRAELVRQN 215
E + + + +Q F + + QE+ + + IEAE QR K R+ EL+ +
Sbjct: 86 EEQNLIEQSITESQRIFSEKQRLEQERFNRELLEKKRIEAERQRLKDEEERRKKELMEKE 145
Query: 216 KSAR 227
K +
Sbjct: 146 KKEK 149
Score = 24.6 bits (51), Expect = 8.8
Identities = 15/47 (31%), Positives = 26/47 (55%)
Frame = +3
Query: 6 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRL 146
E KK ER+R EEQ K + Q + +Q + + K ++A ++R+
Sbjct: 143 EKEKKEKERIRLIEEQ--KHKENEQRRLKQEQIDAKRKEEEAREKRM 187
>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
pombe|chr 1||Partial|Manual
Length = 1887
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 81 EKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVR 209
++ QLE A+ EKL + + ++E ++ + N E+ + V+
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQ-MVEGDKEKDKTNEEKNKDEVK 1130
>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1919
Score = 24.6 bits (51), Expect = 8.8
Identities = 11/43 (25%), Positives = 24/43 (55%)
Frame = +3
Query: 81 EKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVR 209
++ QLE A+ EKL + + ++E ++ + N E+ + V+
Sbjct: 1089 KRVDQLEEALNEKLARLVGEQ-MVEGDKEKDKTNEEKNKDEVK 1130
>SPCC1393.02c |||non-specific DNA binding protein Spt2
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 406
Score = 24.6 bits (51), Expect = 8.8
Identities = 17/60 (28%), Positives = 26/60 (43%)
Frame = +3
Query: 48 EQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVRQNKSAR 227
EQ+RK + + + E Q KLQ+ + R E EQR + +R + S R
Sbjct: 26 EQLRKAQIREKAREITEERNRQRKLQRERELRQKYEEEQRRQQAMEAKRIAASTRQTSER 85
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,484,749
Number of Sequences: 5004
Number of extensions: 20807
Number of successful extensions: 87
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 84
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 206265012
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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