Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1381X
(514 letters)
Database: arabidopsis
28,952 sequences; 12,070,560 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
At5g44180.1 68418.m05406 homeobox transcription factor, putative... 34 0.049
At4g38070.1 68417.m05377 bHLH family protein contains Pfam profi... 33 0.085
At4g22950.1 68417.m03313 MADS-box protein (AGL19) MADS-box prote... 33 0.15
At3g61260.1 68416.m06856 DNA-binding family protein / remorin fa... 32 0.26
At2g18540.1 68415.m02160 cupin family protein contains Pfam prof... 31 0.46
At4g11880.1 68417.m01889 MADS-box protein (AGL14) nearly identic... 31 0.60
At1g64330.1 68414.m07290 myosin heavy chain-related similar to m... 31 0.60
At5g58040.1 68418.m07263 fip1 motif-containing protein contains ... 30 0.80
At5g04890.1 68418.m00513 small heat shock-like protein (RTM2) si... 30 1.1
At3g50370.1 68416.m05508 expressed protein 30 1.1
At2g36410.2 68415.m04470 expressed protein contains Pfam profile... 29 1.4
At1g79110.1 68414.m09224 expressed protein 29 1.4
At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-contain... 29 1.8
At3g52920.2 68416.m05833 expressed protein weak similarity to en... 29 1.8
At3g25680.1 68416.m03196 expressed protein 29 1.8
At1g79280.1 68414.m09242 expressed protein weak similarity to Nu... 29 1.8
At2g21150.1 68415.m02509 XAP5 family protein contains Pfam profi... 29 2.4
At1g09770.1 68414.m01096 myb family transcription factor contain... 29 2.4
At4g01180.1 68417.m00156 XH/XS domain-containing protein contain... 28 3.2
At3g06020.1 68416.m00687 expressed protein ; expression supporte... 28 3.2
At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains... 28 3.2
At1g21160.1 68414.m02646 eukaryotic translation initiation facto... 28 3.2
At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative 28 4.2
At5g16210.1 68418.m01894 HEAT repeat-containing protein contains... 28 4.2
At3g09980.1 68416.m01198 expressed protein contains Pfam profile... 27 5.6
At2g34440.1 68415.m04225 MADS-box family protein similar to SP|Q... 27 5.6
At3g19370.1 68416.m02457 expressed protein 27 7.4
At5g14990.1 68418.m01758 hypothetical protein 27 9.8
At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing ... 27 9.8
At4g25860.1 68417.m03719 oxysterol-binding family protein contai... 27 9.8
At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zi... 27 9.8
At3g19840.1 68416.m02513 FF domain-containing protein / WW domai... 27 9.8
At1g11870.3 68414.m01367 seryl-tRNA synthetase, putative / serin... 27 9.8
At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative / serin... 27 9.8
At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative / serin... 27 9.8
At1g11660.1 68414.m01339 heat shock protein, putative strong sim... 27 9.8
At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /... 27 9.8
>At5g44180.1 68418.m05406 homeobox transcription factor, putative
similar to homeobox transcription factor Hox7/homeotic
protein Hox7 (GI:19486) {Lycopersicon peruvianum};
similar to GP|4165087| Williams-Beuren syndrome deletion
transcript 9 [Homo sapiens]; contains Pfam PF02791: DDT
domain and Pfam PF00046: Homeobox domain
Length = 1694
Score = 34.3 bits (75), Expect = 0.049
Identities = 27/79 (34%), Positives = 46/79 (58%), Gaps = 5/79 (6%)
Frame = +3
Query: 12 LKKMIERLREHEEQVRK-VRAGNQEKFQQLESAIQEKLQQAADRRL---LIEAEQREK-L 176
L+K R+ EEQ+RK + ++E+ ++ E ++EK Q+ +R L + E ++REK L
Sbjct: 350 LEKQDMLRRKREEQIRKEMERQDRERRKEEERLLREK-QREEERYLKEQMRELQRREKFL 408
Query: 177 RNHERRAELVRQNKSARTE 233
+ RAE +RQ + R E
Sbjct: 409 KKETIRAEKMRQKEEMRKE 427
>At4g38070.1 68417.m05377 bHLH family protein contains Pfam profile:
PF00010 helix-loop-helix DNA-binding domain; PMID:
12679534; putative bHLH131 transcription factor
Length = 1513
Score = 33.5 bits (73), Expect = 0.085
Identities = 20/73 (27%), Positives = 37/73 (50%)
Frame = +3
Query: 12 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHER 191
++K +ER +E E+ + + QEK ++ E+ +EKL Q D ++ + + E+
Sbjct: 511 MQKEVERFKEMVEESSRFQTQMQEKMKEAENDYEEKLLQVCD---ALDNTNIDLVAEREK 567
Query: 192 RAELVRQNKSART 230
L RQ +S T
Sbjct: 568 VVSLTRQIESLGT 580
>At4g22950.1 68417.m03313 MADS-box protein (AGL19) MADS-box protein
AGL14, Arabidopsis thaliana, gb:U20184
Length = 219
Score = 32.7 bits (71), Expect = 0.15
Identities = 22/74 (29%), Positives = 40/74 (54%), Gaps = 2/74 (2%)
Frame = +3
Query: 12 LKKMIERLREHEEQV--RKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 185
L K IE+L + ++ + A + E+ QQLE+ + L + ++ + E+ EKL+
Sbjct: 96 LTKKIEQLEISKRKLLGEGIDACSIEELQQLENQLDRSLSRIRAKKYQLLREEIEKLKAE 155
Query: 186 ERRAELVRQNKSAR 227
ER LV++NK +
Sbjct: 156 ER--NLVKENKDLK 167
>At3g61260.1 68416.m06856 DNA-binding family protein / remorin
family protein similar to DNA-binding protein gi|601843
[Arabidopsis thaliana], remorin [Solanum tuberosum]
GI:1881585; contains Pfam profiles PF03763: Remorin
C-terminal region, PF03766: Remorin N-terminal region
Length = 212
Score = 31.9 bits (69), Expect = 0.26
Identities = 24/70 (34%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Frame = +3
Query: 6 ENLKKM-IE-RLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLR 179
EN KK +E +L++ EEQ+ K +A E+ + +AI + +A +RR +IEA++ E +
Sbjct: 133 ENSKKAAVEAQLKKIEEQLEKKKAEYAERMKNKVAAIHK---EAEERRAMIEAKRGEDVL 189
Query: 180 NHERRAELVR 209
E A R
Sbjct: 190 KAEETAAKYR 199
>At2g18540.1 68415.m02160 cupin family protein contains Pfam profile
PF00190: Cupin
Length = 707
Score = 31.1 bits (67), Expect = 0.46
Identities = 20/73 (27%), Positives = 39/73 (53%)
Frame = +3
Query: 15 KKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERR 194
KK E R+ EE++ K+R +++ ++ E +++ ++ A RR E+R++ +R
Sbjct: 626 KKREEEARKREEEMAKIREEERQR-KEREDVERKRREEEAMRR----EEERKREEEAAKR 680
Query: 195 AELVRQNKSARTE 233
AE R+ K E
Sbjct: 681 AEEERRKKEEEEE 693
Score = 28.7 bits (61), Expect = 2.4
Identities = 17/68 (25%), Positives = 34/68 (50%)
Frame = +3
Query: 24 IERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAEL 203
IER R+ EE+ RK +E ++ E + + ++ +R+ E E R++ +R E
Sbjct: 443 IERRRKEEEEARK----REEAKRREEEEAKRREEEETERKKREEEEARKREEERKREEEE 498
Query: 204 VRQNKSAR 227
++ + R
Sbjct: 499 AKRREEER 506
>At4g11880.1 68417.m01889 MADS-box protein (AGL14) nearly identical
to MADS-box protein AGL14 GI:862644
Length = 221
Score = 30.7 bits (66), Expect = 0.60
Identities = 16/50 (32%), Positives = 28/50 (56%)
Frame = +3
Query: 69 AGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVRQNK 218
A + E+ QQLE+ + L + ++ + E+ EKL+ ER L+ +NK
Sbjct: 118 ASSIEELQQLENQLDRSLMKIRAKKYQLLREETEKLKEKER--NLIAENK 165
>At1g64330.1 68414.m07290 myosin heavy chain-related similar to
myosin heavy chain (GI:1850913) [Entamoeba histolytica];
similar to Intracellular protein transport protein USO1
(Swiss-Prot:P25386) [Saccharomyces cerevisiae]
Length = 555
Score = 30.7 bits (66), Expect = 0.60
Identities = 20/76 (26%), Positives = 36/76 (47%)
Frame = +3
Query: 9 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHE 188
NL+ E+L +++ + E + ES + +KL+ R +EAE K ++HE
Sbjct: 171 NLRVETEKLTSENKELNE----KLEVAGETESDLNQKLEDVKKERDGLEAELASKAKDHE 226
Query: 189 RRAELVRQNKSARTET 236
E V + + + ET
Sbjct: 227 STLEEVNRLQGQKNET 242
>At5g58040.1 68418.m07263 fip1 motif-containing protein contains
Pfam profile PF05182: Fip1 motif
Length = 1192
Score = 30.3 bits (65), Expect = 0.80
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 2/69 (2%)
Frame = +3
Query: 27 ERLREHEEQVRKVRAGNQEKFQQLESAIQEK--LQQAADRRLLIEAEQREKLRNHERRAE 200
E E + K R+G+ FQQ E IQ+K + A +R+ + +N +R E
Sbjct: 605 ESKTERSSESSKARSGSHRDFQQEEDVIQDKHSSRPANNRKQYDNNAPHQSRKNQDRGKE 664
Query: 201 LVRQNKSAR 227
+ R +++
Sbjct: 665 MERTRAASK 673
>At5g04890.1 68418.m00513 small heat shock-like protein (RTM2)
similar to 17.9 kDa heat-shock protein [Helianthus
annuus] GI:11990130; contains Pfam profile PF00011:
Hsp20/alpha crystallin family; supporting cDNA
gi|7407072|gb|AF208051.1|AF208051; identical to cDNA
small heat shock-like protein (RTM2) GI:7407072, small
heat shock-like protein [Arabidopsis thaliana]
GI:7407073
Length = 366
Score = 29.9 bits (64), Expect = 1.1
Identities = 20/73 (27%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Frame = +3
Query: 12 LKKMIERLREHEE-QVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHE 188
++K+ E + EE ++RK+ QE+ + E A +KLQ+ + + +E + E+ R E
Sbjct: 163 IRKLQEEAKAKEEAEMRKL----QEEAKAKEEAAAKKLQEEIEAKEKLEERKLEERRLEE 218
Query: 189 RRAELVRQNKSAR 227
R+ E ++ + A+
Sbjct: 219 RKLEDMKLAEEAK 231
>At3g50370.1 68416.m05508 expressed protein
Length = 2179
Score = 29.9 bits (64), Expect = 1.1
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +3
Query: 6 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAA----DRRLLIEAEQRE- 170
E+ + +ER+++ +E+ R+ QE+ +L +E+ + A +R+ +E E RE
Sbjct: 467 ESFEAELERVQKMQEEERRRIIEEQERVIELARTEEEERLRLAREQDERQRRLEEEAREA 526
Query: 171 KLRNHERRAELVRQNKSAR 227
RN + R E R+ + R
Sbjct: 527 AFRNEQERLEATRRAEELR 545
>At2g36410.2 68415.m04470 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 192
Score = 29.5 bits (63), Expect = 1.4
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 6 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 185
E L+ M + +R+ VRK ++ + L S +Q+K ++ + + REK++
Sbjct: 105 EELESMADPMRKEVSVVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLI 164
Query: 186 ERRAELVRQNKSAR 227
+ ELV +++ R
Sbjct: 165 TKLMELVGESEKLR 178
>At1g79110.1 68414.m09224 expressed protein
Length = 358
Score = 29.5 bits (63), Expect = 1.4
Identities = 13/45 (28%), Positives = 27/45 (60%)
Frame = +3
Query: 42 HEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKL 176
H Q+ +V+ +EK ++ I E ++Q +RL ++ E+RE++
Sbjct: 163 HLYQMERVKYEIEEKRKRQARTIMEAIEQGLVKRLRVKEEERERI 207
>At4g24580.1 68417.m03522 pleckstrin homology (PH) domain-containing
protein-related / RhoGAP domain-containing protein
contains Pfam domain, PF00620: RhoGAP domain
Length = 902
Score = 29.1 bits (62), Expect = 1.8
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +3
Query: 48 EQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIE 155
E+ +K G ++ +Q +QE+LQQ DR+L +E
Sbjct: 613 ERRKKALYGRRQALEQDVGRLQEQLQQERDRKLALE 648
>At3g52920.2 68416.m05833 expressed protein weak similarity to
enterophilin-2L [Cavia porcellus] GI:12718845; contains
Pfam profile PF04949: Family of unknown function
(DUF662)
Length = 177
Score = 29.1 bits (62), Expect = 1.8
Identities = 18/74 (24%), Positives = 37/74 (50%)
Frame = +3
Query: 6 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 185
E L+ M + +R+ VRK ++ + L S +Q+K ++ + + REK++
Sbjct: 76 EELETMADPMRKEVNWVRKKIDSVNKELKPLGSTVQKKEREYKEALDTFNEKNREKVQLI 135
Query: 186 ERRAELVRQNKSAR 227
+ ELV +++ R
Sbjct: 136 TKLMELVGESEKLR 149
>At3g25680.1 68416.m03196 expressed protein
Length = 558
Score = 29.1 bits (62), Expect = 1.8
Identities = 14/51 (27%), Positives = 27/51 (52%)
Frame = +3
Query: 9 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAE 161
+L + I+ + + + V K Q++ S +Q KL+ D+R ++EAE
Sbjct: 470 SLTEEIDEMSQRLISDKSVYLTEHSKLQEMLSDLQSKLESLIDKRSILEAE 520
>At1g79280.1 68414.m09242 expressed protein weak similarity to
Nucleoprotein TPR (Swiss-Prot:P12270) [Homo sapiens]
Length = 2111
Score = 29.1 bits (62), Expect = 1.8
Identities = 15/52 (28%), Positives = 27/52 (51%)
Frame = +3
Query: 6 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAE 161
E L+ +E + H Q + + N+ +Q+ESA + +A R+ +EAE
Sbjct: 975 EKLRGEVESSKSHMLQYKSIAQVNETALKQMESAHENFRLEAEKRQRSLEAE 1026
>At2g21150.1 68415.m02509 XAP5 family protein contains Pfam profile:
PF04921 XAP5 protein
Length = 337
Score = 28.7 bits (61), Expect = 2.4
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN 182
D KK L EE V K R + KF++ E +KLQQ + L + ++ K++
Sbjct: 60 DTAFKKETVGLVTREEYVEK-RVNIRNKFEEEEKEKLQKLQQEEEELQLEKRNKKRKIKG 118
Query: 183 HER 191
R
Sbjct: 119 SSR 121
>At1g09770.1 68414.m01096 myb family transcription factor contains
Pfam profile: PF00249 myb-like DNA-binding domain
Length = 844
Score = 28.7 bits (61), Expect = 2.4
Identities = 15/49 (30%), Positives = 29/49 (59%), Gaps = 3/49 (6%)
Frame = +3
Query: 69 AGNQEK---FQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELV 206
AGN +K FQ+ +++K+++ + ++A+ + + HERRAE V
Sbjct: 684 AGNADKVAAFQEEMENVRKKMEEDEKKAEHMKAKYKTYTKGHERRAETV 732
>At4g01180.1 68417.m00156 XH/XS domain-containing protein contains
Pfam domain PF03469: XH domain and PF03468: XS domain
Length = 554
Score = 28.3 bits (60), Expect = 3.2
Identities = 17/67 (25%), Positives = 35/67 (52%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN 182
DE + + +R ++EE++ K R + ++ A+ E+ + + L E Q+EK +
Sbjct: 250 DERARLIEQRAIKNEEEMEKTRLERE----MIQKAMCEQNEANEEAMKLAEKHQKEKEKL 305
Query: 183 HERRAEL 203
H+R E+
Sbjct: 306 HKRIMEM 312
>At3g06020.1 68416.m00687 expressed protein ; expression supported
by MPSS
Length = 300
Score = 28.3 bits (60), Expect = 3.2
Identities = 14/57 (24%), Positives = 35/57 (61%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREK 173
+E ++ IE +R++EE++ + + +EK ++++ EK+Q++ R IE ++ +
Sbjct: 234 EEEEEETIETVRDNEEEIPEYKEEEEEKEEEIKVKGVEKVQRS---RRCIEGDRENR 287
>At2g03150.1 68415.m00268 ATP/GTP-binding protein family contains
ATP/GTP-binding site motif A (P-loop), PROSITE:PS00017
Length = 1340
Score = 28.3 bits (60), Expect = 3.2
Identities = 15/59 (25%), Positives = 33/59 (55%)
Frame = +3
Query: 51 QVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVRQNKSAR 227
+V +R G++ + + E ++E+ ++ D+R + +RE+ R H+R E R+ + R
Sbjct: 337 RVDDLRKGDRASYLR-EFDLREEERRREDQRARDKEREREREREHDRERERQRERERQR 394
>At1g21160.1 68414.m02646 eukaryotic translation initiation factor 2
family protein / eIF-2 family protein similar to
SP|O60841 Translation initiation factor IF-2 {Homo
sapiens}; contains Pfam profiles PF00009: Elongation
factor Tu GTP binding domain, PF03144: Elongation factor
Tu domain 2
Length = 1088
Score = 28.3 bits (60), Expect = 3.2
Identities = 22/75 (29%), Positives = 36/75 (48%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN 182
D KK + +++ E++V K QE + + A K ++ + RL E E+R
Sbjct: 202 DRQGKKDV-KIKVAEKKVPKHVREKQETLARWKEAEDGKKKEE-EERLRKEEEERRIEEE 259
Query: 183 HERRAELVRQNKSAR 227
ER AE +RQ + R
Sbjct: 260 REREAEEIRQKRKIR 274
>At5g54910.1 68418.m06839 DEAD/DEAH box helicase, putative
Length = 739
Score = 27.9 bits (59), Expect = 4.2
Identities = 18/61 (29%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 15 KKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN-HER 191
+KMIE+L+E + ++ ++A NQ K Q++ + L + D + + + LR+ H+R
Sbjct: 427 EKMIEKLQEAKVPIKLIKANNQ-KLQEVSRLLAALLVKYPDLQGVAQRAFITYLRSIHKR 485
Query: 192 R 194
R
Sbjct: 486 R 486
>At5g16210.1 68418.m01894 HEAT repeat-containing protein contains
Pfam profile PF02985: HEAT repeat
Length = 1180
Score = 27.9 bits (59), Expect = 4.2
Identities = 15/64 (23%), Positives = 33/64 (51%)
Frame = +3
Query: 3 DENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRN 182
+E+LKK IERL + ++ + K + +E+ + + + DR +++ ++
Sbjct: 222 NESLKKEIERLSKEKDGLLKSKENFEEQIGAFNKSTESLQKDLRDREKQVQSLKQSS--E 279
Query: 183 HERR 194
H+RR
Sbjct: 280 HQRR 283
>At3g09980.1 68416.m01198 expressed protein contains Pfam profile
PF04949: Family of unknown function (DUF662)
Length = 178
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/74 (22%), Positives = 36/74 (48%)
Frame = +3
Query: 6 ENLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNH 185
E L+ + + +R+ VRK ++ + L +Q+K ++ + + REK++
Sbjct: 90 EELEGLADPMRKEVAMVRKKIDSVNKELKPLGHTVQKKEREYKEALEAFNEKNREKVQLI 149
Query: 186 ERRAELVRQNKSAR 227
R ELV +++ R
Sbjct: 150 TRLMELVGESEKMR 163
>At2g34440.1 68415.m04225 MADS-box family protein similar to
SP|Q9XGJ4 MADS box protein GGM13 {Gnetum gnemon};
contains Pfam profile PF00319: SRF-type transcription
factor (DNA-binding and dimerisation domain)
Length = 172
Score = 27.5 bits (58), Expect = 5.6
Identities = 17/64 (26%), Positives = 35/64 (54%), Gaps = 1/64 (1%)
Frame = +3
Query: 12 LKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEA-EQREKLRNHE 188
LK++ ERL ++V + ++ ++LESA E+ +++ + L E E +++L+
Sbjct: 91 LKRLSERLDLLNQEVEAEKERGEKSQEKLESAGDERFKESIETLTLDELNEYKDRLQTVH 150
Query: 189 RRAE 200
R E
Sbjct: 151 GRIE 154
>At3g19370.1 68416.m02457 expressed protein
Length = 704
Score = 27.1 bits (57), Expect = 7.4
Identities = 21/86 (24%), Positives = 41/86 (47%)
Frame = +3
Query: 45 EEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAELVRQNKSA 224
+E R + +K +++ES +++L++ + E EK+RN E + +R+NK
Sbjct: 461 DEIKRHLGLTKSDKVEKIESDEKQELRKKLE-------ESVEKIRNLEAEMKTLRENKE- 512
Query: 225 RTETXXXXXXXXXXXXDTRLSRSRHN 302
+ E DT+L+ +R N
Sbjct: 513 KVEAEMETEKSMKEDLDTKLNITRAN 538
>At5g14990.1 68418.m01758 hypothetical protein
Length = 666
Score = 26.6 bits (56), Expect = 9.8
Identities = 24/60 (40%), Positives = 30/60 (50%), Gaps = 5/60 (8%)
Frame = +3
Query: 42 HEEQVRKVRAGNQEKFQQL---ESAIQEKLQQAADRRLLIEAEQREKLRN--HERRAELV 206
HEE VR +R +L E AI EK DR+LL +E +E LRN + ELV
Sbjct: 78 HEEVVRDLREIKDRLHHRLLETEIAILEK-----DRQLLEMSENQESLRNVLESKETELV 132
>At5g09880.1 68418.m01142 RNA recognition motif (RRM)-containing
protein
Length = 527
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = +3
Query: 36 REHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKLRNHERRAE 200
R+ + + KVR G+++K E + +E+ + D+ E +REK + R E
Sbjct: 84 RDKDRERDKVREGSRDKESDRERSSKERDRSDRDKPRDRERREREKRSSSRSRRE 138
>At4g25860.1 68417.m03719 oxysterol-binding family protein contains
Pfam profile PF01237: Oxysterol-binding protein
Length = 386
Score = 26.6 bits (56), Expect = 9.8
Identities = 10/34 (29%), Positives = 21/34 (61%)
Frame = +3
Query: 99 ESAIQEKLQQAADRRLLIEAEQREKLRNHERRAE 200
E +++ ++A + ++L+E +QRE L+ E E
Sbjct: 318 EGILKKDWERAREAKILVEEKQREALKQREASGE 351
>At4g00380.1 68417.m00052 XH/XS domain-containing protein / XS zinc
finger domain-containing protein contains Pfam domains
PF03469: XH domain, PF03468: XS domain and PF03470: XS
zinc finger domain
Length = 635
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/70 (27%), Positives = 35/70 (50%), Gaps = 7/70 (10%)
Frame = +3
Query: 24 IERLREHEEQVRKVRAGNQEKFQQLESA-IQ------EKLQQAADRRLLIEAEQREKLRN 182
++R+ + ++ + + A +K QQ+ IQ EKL+ DR++ + ++L
Sbjct: 285 LQRVLDEKKNLHQAFAEETKKMQQMSLRHIQRILYDKEKLRNELDRKMRDLESRAKQLEK 344
Query: 183 HERRAELVRQ 212
HE EL RQ
Sbjct: 345 HEALTELERQ 354
>At3g19840.1 68416.m02513 FF domain-containing protein / WW
domain-containing protein weak similarity to
transcription factor CA150b [Mus musculus] GI:6329166;
contains Pfam profiles PF01846: FF domain, PF00397: WW
domain
Length = 743
Score = 26.6 bits (56), Expect = 9.8
Identities = 11/43 (25%), Positives = 26/43 (60%)
Frame = +3
Query: 27 ERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIE 155
++LRE E ++RK + ++ +++ I+ K ++ + LL+E
Sbjct: 570 DKLRERERELRKRKEREVQEVERVRQKIRRKEASSSYQALLVE 612
>At1g11870.3 68414.m01367 seryl-tRNA synthetase, putative /
serine--tRNA ligase, putative similar to PIR|T03949
serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
contains Pfam profiles PF00587: tRNA synthetase class II
core domain (G, H, P, S and T), PF02403: Seryl-tRNA
synthetase N-terminal domain
Length = 402
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 9 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQE 116
NL+K +ERLRE V K G E ++ E ++E
Sbjct: 116 NLQKEVERLREERNNVAKKMKGKLEPSER-ERLVEE 150
>At1g11870.2 68414.m01369 seryl-tRNA synthetase, putative /
serine--tRNA ligase, putative similar to PIR|T03949
serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
contains Pfam profiles PF00587: tRNA synthetase class II
core domain (G, H, P, S and T), PF02403: Seryl-tRNA
synthetase N-terminal domain
Length = 514
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 9 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQE 116
NL+K +ERLRE V K G E ++ E ++E
Sbjct: 116 NLQKEVERLREERNNVAKKMKGKLEPSER-ERLVEE 150
>At1g11870.1 68414.m01368 seryl-tRNA synthetase, putative /
serine--tRNA ligase, putative similar to PIR|T03949
serine--tRNA ligase (EC 6.1.1.11) serS {Zea mays};
contains Pfam profiles PF00587: tRNA synthetase class II
core domain (G, H, P, S and T), PF02403: Seryl-tRNA
synthetase N-terminal domain
Length = 512
Score = 26.6 bits (56), Expect = 9.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +3
Query: 9 NLKKMIERLREHEEQVRKVRAGNQEKFQQLESAIQE 116
NL+K +ERLRE V K G E ++ E ++E
Sbjct: 114 NLQKEVERLREERNNVAKKMKGKLEPSER-ERLVEE 148
>At1g11660.1 68414.m01339 heat shock protein, putative strong
similarity to gb|Z70314 heat-shock protein from
Arabidopsis thaliana and is a member of the PF|00012
Hsp70 protein family
Length = 773
Score = 26.6 bits (56), Expect = 9.8
Identities = 19/53 (35%), Positives = 28/53 (52%)
Frame = +3
Query: 18 KMIERLREHEEQVRKVRAGNQEKFQQLESAIQEKLQQAADRRLLIEAEQREKL 176
K RLR E+V+KV + N E +E ++EK D R I+ E+ E+L
Sbjct: 260 KACVRLRASCEKVKKVLSANAEAQLNIECLMEEK-----DVRSFIKREEFEQL 307
>At1g01040.1 68414.m00004 DEAD/DEAH box helicase carpel factory /
CAF identical to RNA helicase/RNAseIII CAF protein
GB:AAF03534 GI:6102610 from [Arabidopsis thaliana]
Length = 1909
Score = 26.6 bits (56), Expect = 9.8
Identities = 15/54 (27%), Positives = 31/54 (57%), Gaps = 6/54 (11%)
Frame = +3
Query: 39 EHEEQVRKVRAGNQE---KFQQLESAIQEKLQQAAD---RRLLIEAEQREKLRN 182
+HE V+KV GN+E K ++ +S +E+ ++ + RR ++ ++ K +N
Sbjct: 211 DHERDVKKVSGGNRECDVKAEENKSKPEERKEKVVEEQARRYQLDVLEQAKAKN 264
Database: arabidopsis
Posted date: Oct 4, 2007 10:56 AM
Number of letters in database: 12,070,560
Number of sequences in database: 28,952
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,982,995
Number of Sequences: 28952
Number of extensions: 114260
Number of successful extensions: 476
Number of sequences better than 10.0: 37
Number of HSP's better than 10.0 without gapping: 457
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 476
length of database: 12,070,560
effective HSP length: 76
effective length of database: 9,870,208
effective search space used: 927799552
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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