Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1378
         (571 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    42   6e-05
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    29   0.48 
SPCC594.04c |||steroid oxidoreductase superfamily protein|Schizo...    26   4.5  
SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subuni...    25   5.9  
SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces pombe...    25   5.9  
SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr 1|||M...    25   7.8  
SPAC23C11.04c |pnk1||DNA kinase/phosphatase Pnk1|Schizosaccharom...    25   7.8  

>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 41.9 bits (94), Expect = 6e-05
 Identities = 25/79 (31%), Positives = 38/79 (48%), Gaps = 2/79 (2%)
 Frame = +1

Query: 274 EYHQRLQTFLLWYVDAASFIDVDDDQWTFFTVFEKYQTSEGSXXXXXXXXXXXXXXXXXP 453
           E  Q LQ F L++++  SFID++D +W  + +   Y+T+E                    
Sbjct: 135 EIMQHLQIFSLFFIEGGSFIDLNDPRWMVYLL---YETTEDDYCLRGYCTVYKYYKWDKL 191

Query: 454 NHQ--RPRISQVLTLPPFR 504
            H   R RISQ + LPPF+
Sbjct: 192 IHDGIRARISQFVILPPFQ 210


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 29.1 bits (62), Expect = 0.48
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
 Frame = +3

Query: 414 SCLC--NCIQILCLSKPSTSTNLTS-SYITALQKTGICAQMLQAVYSH 548
           +C C  NC  + CL+ P+ +T L + ++I+AL+K  I    L   + H
Sbjct: 327 ACQCGDNCECLGCLTHPNNATTLAALNHISALEKETISHTDLHHTFKH 374


>SPCC594.04c |||steroid oxidoreductase superfamily
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 471 SWTLMVWIGIISVYSCIGSCSVSNTAFTRLIFLKNCEECPL 349
           +WT+  W+G++ V+   GS        TRL    +CE+ PL
Sbjct: 276 NWTIFAWLGLVGVFQ--GS--------TRLTEKMSCEKYPL 306


>SPAC1D4.12 |rad15|rhp3|transcription factor TFIIH complex subunit
           Rad15|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 772

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
 Frame = +2

Query: 98  KVIAPGYITNLDHFVSQLKK-DESFTPHGKMLHAFNVTP 211
           K   PG I   +HF++ LK+  E      K+LH    TP
Sbjct: 315 KEAVPGNIRRAEHFIAFLKRFVEYLKTRMKVLHVIAETP 353


>SPBC2G2.11 |||N-myristoyltransferase 1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 5.9
 Identities = 13/47 (27%), Positives = 22/47 (46%)
 Frame = +3

Query: 423 CNCIQILCLSKPSTSTNLTSSYITALQKTGICAQMLQAVYSHFIIIP 563
           C  +  LC+ K   S  LT   I  + +      + QAVY+  +++P
Sbjct: 179 CAEVNFLCIHKKLRSKRLTPLLIKEVTRRCHLENVWQAVYTAGVLLP 225


>SPAC13G6.09 |||zf-MYND type |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 274

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/16 (50%), Positives = 12/16 (75%)
 Frame = -2

Query: 447 GIISVYSCIGSCSVSN 400
           GI+S+Y C  SC ++N
Sbjct: 237 GILSIYVCSASCDLAN 252


>SPAC23C11.04c |pnk1||DNA kinase/phosphatase
           Pnk1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 25.0 bits (52), Expect = 7.8
 Identities = 8/20 (40%), Positives = 16/20 (80%)
 Frame = +2

Query: 386 RVKAVFDTLQLPMQLYTDIM 445
           +++A+F++L LP+ LY  I+
Sbjct: 138 KIRAIFESLDLPIVLYAAIL 157


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,328,545
Number of Sequences: 5004
Number of extensions: 46228
Number of successful extensions: 146
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)