Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1378
(571 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0578 + 10869627-10869702,10870489-10870555,10870813-108709... 33 0.16
08_02_1225 + 25392023-25392028,25392611-25392683,25392972-25393168 30 1.5
09_02_0566 + 10732359-10732497,10733114-10733267,10733448-107335... 29 2.6
02_04_0473 + 23197294-23197340,23197443-23197680,23197792-231980... 29 2.6
11_08_0014 - 27631971-27632374,27632486-27635402 28 6.0
04_04_0765 - 27910189-27912393,27912521-27912598 28 6.0
02_01_0365 + 2621302-2621711,2622442-2622620,2623381-2623496,262... 28 6.0
01_06_0355 + 28657833-28660665,28660762-28661126 28 6.0
08_01_0344 + 3043824-3044123,3044260-3044314,3044810-3044985,304... 27 8.0
02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410 27 8.0
>09_02_0578 +
10869627-10869702,10870489-10870555,10870813-10870963,
10871043-10871111,10871992-10872030,10872113-10872186,
10872281-10872347,10872902-10873075,10873169-10873852
Length = 466
Score = 33.1 bits (72), Expect = 0.16
Identities = 18/65 (27%), Positives = 27/65 (41%)
Frame = +1
Query: 310 YVDAASFIDVDDDQWTFFTVFEKYQTSEGSXXXXXXXXXXXXXXXXXPNHQRPRISQVLT 489
YV ++ ID+ + W V +K + S P R RISQ+L
Sbjct: 183 YVLGSTPIDITEHGWEMLLVVKKSAQASSSSNFLVLGFAAVHHFYHYPESTRLRISQILV 242
Query: 490 LPPFR 504
LPP++
Sbjct: 243 LPPYQ 247
>08_02_1225 + 25392023-25392028,25392611-25392683,25392972-25393168
Length = 91
Score = 29.9 bits (64), Expect = 1.5
Identities = 17/54 (31%), Positives = 31/54 (57%), Gaps = 4/54 (7%)
Frame = +2
Query: 50 SKSEGMKADDVEGALTKVIAPGYITNLDHFVSQLK----KDESFTPHGKMLHAF 199
SK +G++ +VEG+L KV+ GY N + L+ + E ++P ++L A+
Sbjct: 23 SKVKGVERVEVEGSLQKVVVTGY-ANRSKILKALRRVGLRAEPWSPRNELLSAY 75
>09_02_0566 +
10732359-10732497,10733114-10733267,10733448-10733519,
10733701-10733769,10734430-10734501,10734590-10734661,
10734769-10734840,10734928-10734999,10735121-10735192,
10735293-10735364,10735435-10735506,10735826-10735897,
10736039-10736104,10736638-10736676,10736787-10736845,
10737166-10737545,10737629-10737824,10738012-10738179,
10738618-10738736,10738873-10739083,10739163-10739403,
10739830-10739980,10740469-10740828
Length = 999
Score = 29.1 bits (62), Expect = 2.6
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +3
Query: 177 MEKCCMHSM*PLLMERADHLKYIIVRFNSRFSRIPSTFTNISPV 308
+ C ++ P + D+LK++ + FN IP++F N+ V
Sbjct: 291 LRNCSINGSIPSYIGNMDNLKHLDLSFNKLTGEIPASFANMGHV 334
>02_04_0473 +
23197294-23197340,23197443-23197680,23197792-23198016,
23198616-23198762,23198827-23198961,23199415-23199507,
23199925-23200044,23200303-23200413,23200486-23200611,
23200731-23200829,23201024-23201104
Length = 473
Score = 29.1 bits (62), Expect = 2.6
Identities = 16/43 (37%), Positives = 24/43 (55%)
Frame = +1
Query: 193 CIQCNPF*WREQII*SILL*DSTQGFLEYHQRLQTFLLWYVDA 321
CIQ +P R + +I+L + F ++H+RLQ L VDA
Sbjct: 358 CIQSSPIDTRRALYKNIVLSGGSTMFKDFHRRLQRDLKKIVDA 400
>11_08_0014 - 27631971-27632374,27632486-27635402
Length = 1106
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/35 (34%), Positives = 18/35 (51%)
Frame = +3
Query: 207 PLLMERADHLKYIIVRFNSRFSRIPSTFTNISPVV 311
P + L Y+ + +N +PSTF NI P+V
Sbjct: 393 PAFIGNLSELSYLGLGYNQLTGPVPSTFGNIRPLV 427
>04_04_0765 - 27910189-27912393,27912521-27912598
Length = 760
Score = 27.9 bits (59), Expect = 6.0
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = +3
Query: 396 QCSIRYSCLCNCIQILCLSKPSTS 467
QC +RY L + ++CLS PS S
Sbjct: 58 QCLLRYRVLLHVRSVVCLSAPSAS 81
>02_01_0365 +
2621302-2621711,2622442-2622620,2623381-2623496,
2623626-2623964,2624113-2624307,2624505-2624594,
2625288-2625518,2625632-2625952
Length = 626
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/24 (54%), Positives = 15/24 (62%)
Frame = +1
Query: 307 WYVDAASFIDVDDDQWTFFTVFEK 378
W DA F+DV DD+ FF V EK
Sbjct: 555 WASDALHFLDVSDDE-HFFDVIEK 577
>01_06_0355 + 28657833-28660665,28660762-28661126
Length = 1065
Score = 27.9 bits (59), Expect = 6.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +3
Query: 207 PLLMERADHLKYIIVRFNSRFSRIPSTFTNISPV 308
P +E L Y+ + +NS IP +F N+SP+
Sbjct: 622 PASLELFSTLTYLDLSYNSFSGTIPKSFANLSPL 655
>08_01_0344 +
3043824-3044123,3044260-3044314,3044810-3044985,
3045083-3045283,3045383-3045642,3045909-3046222,
3046399-3046622,3047046-3047398,3047709-3047826,
3047875-3048133,3048252-3049729
Length = 1245
Score = 27.5 bits (58), Expect = 8.0
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 471 SWTLMVWIGIISVYS 427
SW LMVWIG ++V S
Sbjct: 297 SWALMVWIGAVAVTS 311
>02_02_0173 - 7433744-7433775,7434002-7434241,7434548-7437410
Length = 1044
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/34 (32%), Positives = 19/34 (55%)
Frame = +3
Query: 207 PLLMERADHLKYIIVRFNSRFSRIPSTFTNISPV 308
PL + A L+Y+ ++ NS + IP+ N S +
Sbjct: 183 PLFLANASSLRYLSLKNNSLYGSIPAALFNSSTI 216
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,159,858
Number of Sequences: 37544
Number of extensions: 270497
Number of successful extensions: 679
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 679
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1317005676
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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