SilkBase IMG001 IMG002 IMG003 IMG005 IMG006 IMG007 IMG008 IMG009 kuwako IMG010 IMG011 IMG012

Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= br--1378
         (571 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)                    55   5e-08
SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)                31   0.88 
SB_45638| Best HMM Match : efhand (HMM E-Value=0.00028)                29   3.5  
SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   4.7  
SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)            27   8.2  
SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)                   27   8.2  

>SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4)
          Length = 252

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 22/66 (33%), Positives = 41/66 (62%)
 Frame = +2

Query: 2   SLQTYLGIDYTDKIEPSKSEGMKADDVEGALTKVIAPGYITNLDHFVSQLKKDESFTPHG 181
           +L TYLG+ Y   I    ++G++AD V   + +    G++TN D F+++L +  SF P G
Sbjct: 82  TLLTYLGLTYESNINGKVADGIEADPVVQIIGEQFPGGFLTNKDEFIAKLPEQSSFVPMG 141

Query: 182 KMLHAF 199
           +++H++
Sbjct: 142 ELIHSY 147


>SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09)
          Length = 2059

 Score = 30.7 bits (66), Expect = 0.88
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = +2

Query: 8    QTYLGIDYTDKIEPSKSEGMKADDVEGALTKVI 106
            QTY G++  +  E SKS+G+KAD+V G+   V+
Sbjct: 1587 QTYSGLN--NPAEYSKSQGLKADEVTGSFGPVV 1617


>SB_45638| Best HMM Match : efhand (HMM E-Value=0.00028)
          Length = 146

 Score = 28.7 bits (61), Expect = 3.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 179 GKMLHAFNVTPFDGESRSFEVYYCEIQLKVF*NTINVYKHFS 304
           GKML A  + P DGE +  E  +   +   F   + +Y  FS
Sbjct: 32  GKMLRAMGLNPIDGEVKKVEADFKTKERVSFEEWLPIYTEFS 73


>SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1006

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 11/34 (32%), Positives = 22/34 (64%)
 Frame = +3

Query: 234 LKYIIVRFNSRFSRIPSTFTNISPVVCRCSIIHR 335
           + Y++V  + +FS +P + TN+S  +C+  +I R
Sbjct: 640 ITYLLV-VSEKFSFLPESLTNLSSTICQSRVICR 672


>SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2)
          Length = 953

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 120 IYPGAITLVRAPSTSSAFIPSDL 52
           ++PG + L R  STS+A I SDL
Sbjct: 187 LFPGTVALNRCRSTSAASITSDL 209


>SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5)
          Length = 754

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 120 IYPGAITLVRAPSTSSAFIPSDL 52
           ++PG + L R  STS+A I SDL
Sbjct: 43  LFPGTVALNRCRSTSAASITSDL 65


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,042,242
Number of Sequences: 59808
Number of extensions: 339633
Number of successful extensions: 871
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 16,821,457
effective HSP length: 78
effective length of database: 12,156,433
effective search space used: 1349364063
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)

- SilkBase 1999-2023 -