BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= br--1378 (571 letters) Database: nematostella 59,808 sequences; 16,821,457 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4) 55 5e-08 SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) 31 0.88 SB_45638| Best HMM Match : efhand (HMM E-Value=0.00028) 29 3.5 SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 4.7 SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) 27 8.2 SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) 27 8.2 >SB_10053| Best HMM Match : DUF402 (HMM E-Value=3.4) Length = 252 Score = 54.8 bits (126), Expect = 5e-08 Identities = 22/66 (33%), Positives = 41/66 (62%) Frame = +2 Query: 2 SLQTYLGIDYTDKIEPSKSEGMKADDVEGALTKVIAPGYITNLDHFVSQLKKDESFTPHG 181 +L TYLG+ Y I ++G++AD V + + G++TN D F+++L + SF P G Sbjct: 82 TLLTYLGLTYESNINGKVADGIEADPVVQIIGEQFPGGFLTNKDEFIAKLPEQSSFVPMG 141 Query: 182 KMLHAF 199 +++H++ Sbjct: 142 ELIHSY 147 >SB_21169| Best HMM Match : zf-CHY (HMM E-Value=2.1e-09) Length = 2059 Score = 30.7 bits (66), Expect = 0.88 Identities = 15/33 (45%), Positives = 23/33 (69%) Frame = +2 Query: 8 QTYLGIDYTDKIEPSKSEGMKADDVEGALTKVI 106 QTY G++ + E SKS+G+KAD+V G+ V+ Sbjct: 1587 QTYSGLN--NPAEYSKSQGLKADEVTGSFGPVV 1617 >SB_45638| Best HMM Match : efhand (HMM E-Value=0.00028) Length = 146 Score = 28.7 bits (61), Expect = 3.5 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +2 Query: 179 GKMLHAFNVTPFDGESRSFEVYYCEIQLKVF*NTINVYKHFS 304 GKML A + P DGE + E + + F + +Y FS Sbjct: 32 GKMLRAMGLNPIDGEVKKVEADFKTKERVSFEEWLPIYTEFS 73 >SB_10830| Best HMM Match : No HMM Matches (HMM E-Value=.) Length = 1006 Score = 28.3 bits (60), Expect = 4.7 Identities = 11/34 (32%), Positives = 22/34 (64%) Frame = +3 Query: 234 LKYIIVRFNSRFSRIPSTFTNISPVVCRCSIIHR 335 + Y++V + +FS +P + TN+S +C+ +I R Sbjct: 640 ITYLLV-VSEKFSFLPESLTNLSSTICQSRVICR 672 >SB_22024| Best HMM Match : Tymo_45kd_70kd (HMM E-Value=1.2) Length = 953 Score = 27.5 bits (58), Expect = 8.2 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 120 IYPGAITLVRAPSTSSAFIPSDL 52 ++PG + L R STS+A I SDL Sbjct: 187 LFPGTVALNRCRSTSAASITSDL 209 >SB_15235| Best HMM Match : DUF1421 (HMM E-Value=1.5) Length = 754 Score = 27.5 bits (58), Expect = 8.2 Identities = 12/23 (52%), Positives = 16/23 (69%) Frame = -2 Query: 120 IYPGAITLVRAPSTSSAFIPSDL 52 ++PG + L R STS+A I SDL Sbjct: 43 LFPGTVALNRCRSTSAASITSDL 65 Database: nematostella Posted date: Oct 22, 2007 1:22 PM Number of letters in database: 16,821,457 Number of sequences in database: 59,808 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 17,042,242 Number of Sequences: 59808 Number of extensions: 339633 Number of successful extensions: 871 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 788 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 870 length of database: 16,821,457 effective HSP length: 78 effective length of database: 12,156,433 effective search space used: 1349364063 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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