Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= br--1378
(571 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical pr... 47 1e-05
Z78198-11|CAH04700.1| 579|Caenorhabditis elegans Hypothetical p... 28 4.1
Z78198-10|CAB01568.1| 569|Caenorhabditis elegans Hypothetical p... 28 4.1
AF083654-1|AAC32865.1| 569|Caenorhabditis elegans putative pota... 28 4.1
Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical p... 28 5.4
AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical ... 28 5.4
AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear recep... 28 5.4
AY962814-1|AAX81435.1| 189|Caenorhabditis elegans calexcitin 2 ... 27 9.5
AL132860-22|CAB60520.1| 282|Caenorhabditis elegans Hypothetical... 27 9.5
AF067608-3|AAC17655.2| 302|Caenorhabditis elegans Hypothetical ... 27 9.5
>Z49128-4|CAA88954.1| 541|Caenorhabditis elegans Hypothetical
protein M03C11.4 protein.
Length = 541
Score = 46.8 bits (106), Expect = 1e-05
Identities = 24/87 (27%), Positives = 43/87 (49%), Gaps = 2/87 (2%)
Frame = +1
Query: 253 DSTQGFLEYHQRLQTFLLWYVDAASFIDVDDDQWTFFTVFEKYQTSE--GSXXXXXXXXX 426
+ T+ F + +R+QT +++++ S D +D W + ++E+ T E GS
Sbjct: 280 EQTEEFNLFLERIQTLGMFFIECCSLTDNTEDNWLHYFIYERCDTGEGDGSTVANVAGYA 339
Query: 427 XXXXXXXXPNHQRPRISQVLTLPPFRK 507
+ RPRI+Q+L LP +RK
Sbjct: 340 TLFKFYNYIDRIRPRIAQMLLLPQYRK 366
Score = 40.7 bits (91), Expect = 7e-04
Identities = 26/92 (28%), Positives = 47/92 (51%), Gaps = 2/92 (2%)
Frame = +2
Query: 2 SLQTYLGIDYTDKIEPSKSEGMKADDVEGALTKV-IAPGY-ITNLDHFVSQLKKDESFTP 175
+L +Y+ + Y+ K + G++ADDV L + P ++ + F +L K + F P
Sbjct: 201 TLYSYINVSYSSKAK--NENGLEADDVIDKLVHPDVRPNVLVSGKEEFQQKLIKQKDFKP 258
Query: 176 HGKMLHAFNVTPFDGESRSFEVYYCEIQLKVF 271
G+M+H F + + +S+EVY Q + F
Sbjct: 259 FGEMVHKFEL-----KGKSYEVYKVAEQTEEF 285
>Z78198-11|CAH04700.1| 579|Caenorhabditis elegans Hypothetical
protein F55C5.3b protein.
Length = 579
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 298 FLLWYVDAASFIDVDDDQWTFFTVFEKYQTS 390
F LW + +A + + + +WT+FT F + TS
Sbjct: 370 FFLWIMISAFIVRLWEYEWTYFTAFYFFFTS 400
>Z78198-10|CAB01568.1| 569|Caenorhabditis elegans Hypothetical
protein F55C5.3a protein.
Length = 569
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 298 FLLWYVDAASFIDVDDDQWTFFTVFEKYQTS 390
F LW + +A + + + +WT+FT F + TS
Sbjct: 370 FFLWIMISAFIVRLWEYEWTYFTAFYFFFTS 400
>AF083654-1|AAC32865.1| 569|Caenorhabditis elegans putative
potassium channel subunitn2P24 protein.
Length = 569
Score = 28.3 bits (60), Expect = 4.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 298 FLLWYVDAASFIDVDDDQWTFFTVFEKYQTS 390
F LW + +A + + + +WT+FT F + TS
Sbjct: 370 FFLWIMISAFIVRLWEYEWTYFTAFYFFFTS 400
>Z82259-10|CAD36480.1| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 130 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 222
G+LCV +R H + AAC C F WR
Sbjct: 32 GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62
>AL022473-2|CAA18549.2| 439|Caenorhabditis elegans Hypothetical
protein H27C11.1a protein.
Length = 439
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 130 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 222
G+LCV +R H + AAC C F WR
Sbjct: 32 GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62
>AF332211-1|AAK17982.1| 439|Caenorhabditis elegans nuclear receptor
NHR-97 protein.
Length = 439
Score = 27.9 bits (59), Expect = 5.4
Identities = 13/31 (41%), Positives = 16/31 (51%)
Frame = +1
Query: 130 GSLCVTIKER*VIHTTWKNAACIQCNPF*WR 222
G+LCV +R H + AAC C F WR
Sbjct: 32 GALCVVCGDRACSHLYYGVAACHGCKCFFWR 62
>AY962814-1|AAX81435.1| 189|Caenorhabditis elegans calexcitin 2
protein.
Length = 189
Score = 27.1 bits (57), Expect = 9.5
Identities = 14/36 (38%), Positives = 17/36 (47%)
Frame = +3
Query: 129 WITLCHN*RKMSHSHHMEKCCMHSM*PLLMERADHL 236
WI LC + RK +K + M LL E DHL
Sbjct: 86 WIQLCQSSRKSVREPAWQKAYVEYMFKLLDESGDHL 121
>AL132860-22|CAB60520.1| 282|Caenorhabditis elegans Hypothetical
protein Y56A3A.29a protein.
Length = 282
Score = 27.1 bits (57), Expect = 9.5
Identities = 13/37 (35%), Positives = 23/37 (62%), Gaps = 2/37 (5%)
Frame = +2
Query: 113 GYITNLDHFV-SQLKKDES-FTPHGKMLHAFNVTPFD 217
GYI+ ++ F+ S++ K + F P ++ FN+ PFD
Sbjct: 77 GYISKIEKFLNSEVNKGKQVFPPPTQIFTTFNLLPFD 113
>AF067608-3|AAC17655.2| 302|Caenorhabditis elegans Hypothetical
protein B0511.7 protein.
Length = 302
Score = 27.1 bits (57), Expect = 9.5
Identities = 10/27 (37%), Positives = 15/27 (55%)
Frame = -3
Query: 344 SSTSMNDAASTYHRRNVCKR*WYSRKP 264
+ST+ D A +H++ K W RKP
Sbjct: 271 TSTATEDEADDHHKKRYAKEAWPGRKP 297
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,911,027
Number of Sequences: 27780
Number of extensions: 265987
Number of successful extensions: 661
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 660
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1187327456
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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